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Generalize dFBA to run with any model/metabolites #2

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hgscott opened this issue Nov 1, 2024 · 0 comments · May be fixed by #3
Open

Generalize dFBA to run with any model/metabolites #2

hgscott opened this issue Nov 1, 2024 · 0 comments · May be fixed by #3
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hgscott commented Nov 1, 2024

Right now the demo in demo/particle_comets.ipynb only uses the textbook model, and only keeps track of glucose, acetate, and biomass. We want to be able to run simulations and keep track of any/all external metabolites.
@hgscott hgscott self-assigned this Nov 1, 2024
@hgscott hgscott linked a pull request Nov 1, 2024 that will close this issue
Nondefault settings #3
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@hgscott hgscott linked a pull request Nov 1, 2024 that will close this issue
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Nondefault settings vivarium-collective/spatio-flux
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