gfastats v1.2.3

Changes in this Release:

• Added smallest component statistics to output (i.e./ smallest scaffold, contig, gap)
• Added support for process substitution in the sequence input
• Added support for ultralarge (>2^32 component size) genomes

gfastats v1.2.2

This is a stable release. It has full support for agp integration in the gfa (including cuts within contigs). Minor bug fixes.

gfastats v1.2.1

Stable release of gfastats. Major change from previous release include:

• ability to incorporate AGP information (such as from scaffolding) onto a GFA

gfastats v1.2.0

Stable release of gfastats. Major changes from previous release include:

• extended gfa2 support (edges and paths)
• scaffolds are now represented as paths in contigs and gaps
• gfastats-validate to validate the output when source changes
• homopolymer compression
• refactored Swiss Army Knife to take advantage of paths
• dedicated GFA statistics

gfastats v1.1

Implemented all basic operations of the swiss army knife plus various bug fixes and marginal performance improvement.

gfastats v1.0

This is the first release of gfastats. Binaries are provide for MacOS and Linux.