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vertesy · Nov 25, 2024 · f0d0988 · f0d0988
1 parent 74a8d4e
commit f0d0988
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Showing 2 changed files with 11 additions and 1 deletion.
diff --git a/R/Seurat.Utils.Metadata.R b/R/Seurat.Utils.Metadata.R
@@ -1624,7 +1624,12 @@ transferLabelsSeurat <- function(
     stopifnot(file.exists(reference_path))
     reference_obj <- readr::read_rds(reference_path)
   } else {
-    stopifnot(inherits(reference_obj, "Seurat") & min(dim(reference_obj)) > 10)
+    stopifnot(
+      inherits(reference_obj, "Seurat"),
+      min(dim(reference_obj)) > 10,
+      reference_ident %in% colnames(reference_obj@meta.data)
+    )
+
   }
 
   # Report

diff --git a/R/Seurat.Utils.R b/R/Seurat.Utils.R
@@ -112,6 +112,11 @@ processSeuratObject <- function(obj, param.list = p, add.meta.fractions = FALSE,
       obj <- addGeneClassFractions(obj)
     } # end if add.meta.fractions
 
+    if("data" %!in% Layers(obj.Pati)) {
+      message("------------------- NormalizeData -------------------")
+      obj <- Seurat::NormalizeData(object = obj)
+    }
+
 
     message("------------------- FindVariableFeatures -------------------")
     tic("FindVariableFeatures")