diff --git a/R/Seurat.Utils.Metadata.R b/R/Seurat.Utils.Metadata.R index 2ca9f56..2f389dc 100644 --- a/R/Seurat.Utils.Metadata.R +++ b/R/Seurat.Utils.Metadata.R @@ -1083,7 +1083,7 @@ plotMetadataCorHeatmap <- function( cutree_rows = n_cutree, cutree_cols = n_cutree ) wplot_save_pheatmap( - x = pl, width = w, , + x = pl, width = w, plotname = FixPlotName(make.names(main), suffix, "pdf") ) } @@ -1160,7 +1160,7 @@ heatmap_calc_clust_median <- function( ... ) wplot_save_pheatmap( - x = pl, width = w, , + x = pl, width = w, plotname = FixPlotName(make.names(plot_name), suffix, "pdf") ) } diff --git a/R/Seurat.Utils.Visualization.R b/R/Seurat.Utils.Visualization.R index e5d63fc..b6cc683 100644 --- a/R/Seurat.Utils.Visualization.R +++ b/R/Seurat.Utils.Visualization.R @@ -2636,7 +2636,7 @@ PlotTopGenesPerCluster <- function( message(" > Running PlotTopGenesPerCluster...") topX.markers <- GetTopMarkers( - df = df_markers, n = nrGenes, + dfDE = df_markers, n = nrGenes, order.by = order.by ) @@ -4217,5 +4217,3 @@ suPlotVariableFeatures <- function(obj = combined.obj, NrVarGenes = 15, - -