From 74a8d4e30a95275edb5630c10754dba3e2fee71a Mon Sep 17 00:00:00 2001 From: vertesy Date: Fri, 22 Nov 2024 17:45:14 +0100 Subject: [PATCH] ... --- R/Seurat.Utils.Visualization.R | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/R/Seurat.Utils.Visualization.R b/R/Seurat.Utils.Visualization.R index 96d8068..65760fd 100644 --- a/R/Seurat.Utils.Visualization.R +++ b/R/Seurat.Utils.Visualization.R @@ -1942,7 +1942,7 @@ qFeatureScatter <- function( #' @param colors A character vector specifying the colors to use for the plot. #' @param clip.outliers A logical indicating whether to clip outliers. #' @param replace.na A logical indicating whether NA values should be replaced. -#' @param pt.size The size of the individual datapoints in the plot. Set to 0 to get a clean violin plot. +#' @param pt.size The size of the individual datapoints in the plot. Default: 0 for simple violin plot. #' @param sub Subtitle of the plot. Default: feature by ident. #' @param suffix An optional string to append to the title of the plot. #' @param suffix.2.title A logical indicating whether to append the suffix to the plot title. @@ -1977,7 +1977,7 @@ qSeuViolin <- function( colors = NULL, clip.outliers = TRUE, replace.na = FALSE, - pt.size = 0.5, + pt.size = 0, sub = NULL, suffix = NULL, suffix.2.title = FALSE, @@ -1993,6 +1993,7 @@ qSeuViolin <- function( grid = TRUE, w = NULL, h = 7, ...) { + message(" > Running qSeuViolin...") # stopifnot( "Seurat" %in% class(obj), # object must be a Seurat object