From 6b1fdde528e9b3c5f7c3f0f12a61f1fdfcc45eee Mon Sep 17 00:00:00 2001
From: vertesy <abel.vertesy@imba.oeaw.ac.at>
Date: Mon, 27 Nov 2023 19:23:51 +0100
Subject: [PATCH] bf

---
 DESCRIPTION                                   | 3 +--
 Development/Create_the_Seurat.utils_Package.R | 3 +++
 NAMESPACE                                     | 2 +-
 R/Seurat.Utils.Visualization.R                | 2 +-
 4 files changed, 6 insertions(+), 4 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 774987a..018946f 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -45,7 +45,6 @@ Imports:
     reshape2,
     rstudioapi,
     scales,
-    Seurat,
     SoupX,
     sparseMatrixStats,
     stringr,
@@ -54,6 +53,6 @@ Imports:
     tidyverse,
     vroom
 Encoding: UTF-8
-Packaged: 2023-11-27 18:43:37.011751
+Packaged: 2023-11-27 19:20:57.386686
 Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.2.3
diff --git a/Development/Create_the_Seurat.utils_Package.R b/Development/Create_the_Seurat.utils_Package.R
index c796dcc..81c1fbc 100644
--- a/Development/Create_the_Seurat.utils_Package.R
+++ b/Development/Create_the_Seurat.utils_Package.R
@@ -30,6 +30,9 @@ devtools::install_local(repository.dir, upgrade = F)
 # Test if you can install from github ------------------------------------------------
 remote.path <- file.path(DESCRIPTION$'github.user', package.name)
 pak::pkg_install(remote.path)
+
+devtools::install_github(repo = "vertesy/Seurat.utils", upgrade = F)
+
 # unload(package.name)
 # require(package.name, character.only = TRUE)
 # # remove.packages(package.name)
diff --git a/NAMESPACE b/NAMESPACE
index e75b650..c7be49b 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -161,8 +161,8 @@ importFrom(CodeAndRoll2,clip.outliers.at.percentile)
 importFrom(DatabaseLinke.R,qHGNC)
 importFrom(EnhancedVolcano,EnhancedVolcano)
 importFrom(HGNChelper,checkGeneSymbols)
-importFrom(MarkdownHelpers,"MarkdownHelpers::color_check")
 importFrom(MarkdownHelpers,TRUE.unless)
+importFrom(MarkdownHelpers,color_check)
 importFrom(MarkdownHelpers,create_set_OutDir)
 importFrom(MarkdownHelpers,filter_HP)
 importFrom(MarkdownHelpers,llogit)
diff --git a/R/Seurat.Utils.Visualization.R b/R/Seurat.Utils.Visualization.R
index 4a78fa7..c95702b 100644
--- a/R/Seurat.Utils.Visualization.R
+++ b/R/Seurat.Utils.Visualization.R
@@ -543,7 +543,7 @@ gg_color_hue <- function(n) { # reproduce the ggplot2 default color palette
 #'   getDiscretePalette()
 #' }
 #' }
-#' @importFrom MarkdownHelpers MarkdownHelpers::color_check
+#' @importFrom MarkdownHelpers color_check
 #'
 #' @export getDiscretePalette
 getDiscretePalette <- function(