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input.xml
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input.xml
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<simulation verbosity='medium'>
<output prefix='simulation'>
<properties filename='out' stride='100'> [ step, time{picosecond}, conserved, temperature{kelvin}, kinetic_cv, potential ] </properties>
<trajectory filename='xc' stride='20' format='xyz' cell_units='ase'> x_centroid{ase} </trajectory>
<trajectory filename='centroid_force' stride='20' format='ase'> f_centroid </trajectory>
<trajectory filename='physical_force' stride='20' format='ase'> forces_component_raw(1) </trajectory>
<checkpoint stride='200'/>
</output>
<total_steps> 20000 </total_steps>
<prng>
<seed>32415</seed>
</prng>
<ffsocket name='maceoff23' mode='unix' pbc='false'>
<address> driver </address>
</ffsocket>
<system>
<initialize nbeads='8'>
<file mode='pdb'> init.pdb </file>
<velocities mode='thermal' units='kelvin'> 500 </velocities>
</initialize>
<forces>
<force forcefield='maceoff23' weight='1'> </force>
<force forcefield='maceoff23' weight='0' nbeads='1'> </force>
</forces>
<motion mode='dynamics'>
<fixcom> True </fixcom>
<dynamics mode='nvt' splitting='baoab'>
<timestep units='femtosecond'> 0.50 </timestep>
<thermostat mode='pile_l'>
<tau units='femtosecond'> 100 </tau>
</thermostat>
</dynamics>
</motion>
<ensemble>
<temperature units='kelvin'> 500 </temperature>
</ensemble>
</system>
</simulation>