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Address stop codon recoding / stop codon readthrough (SCR) #143

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holtgrewe opened this issue Nov 10, 2023 · 2 comments
Open

Address stop codon recoding / stop codon readthrough (SCR) #143

holtgrewe opened this issue Nov 10, 2023 · 2 comments
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enhancement New feature or request

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@holtgrewe
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holtgrewe commented Nov 10, 2023 •
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Is your feature request related to a problem? Please describe.
We currently do not properly handle SCR, e.g., in SELENON.

Describe the solution you'd like
Address this issue.

Describe alternatives you've considered
N/A

Additional context
@holtgrewe holtgrewe added the enhancement New feature or request label Nov 10, 2023
@holtgrewe
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We already have the proper selenoprotein translation table:

https://github.com/bihealth/hgvs-rs/blob/b025ff27436af6228c8156d0f8007bdf1dde1032/src/sequences.rs#L1124

This was referenced Nov 10, 2023
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@holtgrewe holtgrewe moved this to To triage in Release Planning Jan 24, 2024
@holtgrewe
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We really need to double-check whether our selenoprotein support is sufficient.

@holtgrewe holtgrewe moved this from To triage to Backlog in Release Planning Jan 24, 2024
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@holtgrewe