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eac_env.yml
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eac_env.yml
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name: scenicenv
channels:
- main
- r
- conda-forge
- bioconda
- pytorch
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- alsa-lib=1.2.10=hd590300_0
- anyio=4.0.0=pyhd8ed1ab_0
- argon2-cffi=23.1.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py310h2372a71_4
- arrow=1.2.3=pyhd8ed1ab_0
- asttokens=2.4.0=pyhd8ed1ab_0
- async-lru=2.0.4=pyhd8ed1ab_0
- attrs=23.1.0=pyh71513ae_1
- babel=2.12.1=pyhd8ed1ab_1
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.5=pyhd8ed1ab_0
- beautifulsoup4=4.12.2=pyha770c72_0
- binutils_impl_linux-64=2.40=hf600244_0
- bioconductor-edger=3.42.4=r43hf17093f_0
- bioconductor-limma=3.56.2=r43ha9d7317_0
- bleach=6.0.0=pyhd8ed1ab_0
- brotli=1.1.0=hd590300_0
- brotli-bin=1.1.0=hd590300_0
- brotli-python=1.1.0=py310hc6cd4ac_0
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.19.1=hd590300_0
- ca-certificates=2023.7.22=hbcca054_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cairo=1.16.0=h0c91306_1017
- cffi=1.15.1=py310h2fee648_5
- charset-normalizer=3.2.0=pyhd8ed1ab_0
- comm=0.1.4=pyhd8ed1ab_0
- contourpy=1.1.1=py310hd41b1e2_1
- curl=8.3.0=hca28451_0
- dbus=1.13.6=h5008d03_3
- debugpy=1.8.0=py310hc6cd4ac_1
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_0
- exceptiongroup=1.1.3=pyhd8ed1ab_0
- executing=1.2.0=pyhd8ed1ab_0
- expat=2.5.0=hcb278e6_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fqdn=1.5.1=pyhd8ed1ab_0
- freetype=2.12.1=h267a509_2
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=13.2.0=h338b0a0_2
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=13.2.0=h76e1118_2
- glib=2.78.0=hfc55251_0
- glib-tools=2.78.0=hfc55251_0
- gmp=6.2.1=h58526e2_0
- graphite2=1.3.13=h58526e2_1001
- gst-plugins-base=1.22.6=h8e1006c_0
- gstreamer=1.22.6=h98fc4e7_0
- gxx_impl_linux-64=13.2.0=h338b0a0_2
- harfbuzz=8.2.1=h3d44ed6_0
- icu=73.2=h59595ed_0
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=6.8.0=pyha770c72_0
- importlib_metadata=6.8.0=hd8ed1ab_0
- importlib_resources=6.1.0=pyhd8ed1ab_0
- ipykernel=6.25.2=pyh2140261_0
- ipython=8.15.0=pyh0d859eb_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=8.1.1=pyhd8ed1ab_0
- isoduration=20.11.0=pyhd8ed1ab_0
- jedi=0.19.0=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- json5=0.9.14=pyhd8ed1ab_0
- jsonpointer=2.4=py310hff52083_3
- jsonschema=4.19.1=pyhd8ed1ab_0
- jsonschema-specifications=2023.7.1=pyhd8ed1ab_0
- jsonschema-with-format-nongpl=4.19.1=pyhd8ed1ab_0
- jupyter=1.0.0=py310hff52083_8
- jupyter-lsp=2.2.0=pyhd8ed1ab_0
- jupyter_client=8.3.1=pyhd8ed1ab_0
- jupyter_console=6.6.3=pyhd8ed1ab_0
- jupyter_core=5.3.1=py310hff52083_0
- jupyter_events=0.7.0=pyhd8ed1ab_2
- jupyter_server=2.7.3=pyhd8ed1ab_0
- jupyter_server_terminals=0.4.4=pyhd8ed1ab_1
- jupyterlab=4.0.6=pyhd8ed1ab_0
- jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
- jupyterlab_server=2.25.0=pyhd8ed1ab_0
- jupyterlab_widgets=3.0.9=pyhd8ed1ab_0
- kernel-headers_linux-64=2.6.32=he073ed8_16
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py310hd41b1e2_1
- krb5=1.21.2=h659d440_0
- lame=3.100=h166bdaf_1003
- lcms2=2.15=h7f713cb_2
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libblas=3.9.0=18_linux64_openblas
- libbrotlicommon=1.1.0=hd590300_0
- libbrotlidec=1.1.0=hd590300_0
- libbrotlienc=1.1.0=hd590300_0
- libcap=2.69=h0f662aa_0
- libcblas=3.9.0=18_linux64_openblas
- libclang=15.0.7=default_h7634d5b_3
- libclang13=15.0.7=default_h9986a30_3
- libcups=2.3.3=h4637d8d_4
- libcurl=8.3.0=hca28451_0
- libdeflate=1.19=hd590300_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.12=hf998b51_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libflac=1.4.3=h59595ed_0
- libgcc-devel_linux-64=13.2.0=ha9c7c90_2
- libgcc-ng=13.2.0=h807b86a_2
- libgcrypt=1.10.1=h166bdaf_0
- libgfortran-ng=13.2.0=h69a702a_2
- libgfortran5=13.2.0=ha4646dd_2
- libglib=2.78.0=hebfc3b9_0
- libgomp=13.2.0=h807b86a_2
- libgpg-error=1.47=h71f35ed_0
- libiconv=1.17=h166bdaf_0
- libjpeg-turbo=2.1.5.1=hd590300_1
- liblapack=3.9.0=18_linux64_openblas
- libllvm15=15.0.7=h5cf9203_3
- libnghttp2=1.52.0=h61bc06f_0
- libnsl=2.0.0=h7f98852_0
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.24=pthreads_h413a1c8_0
- libopus=1.3.1=h7f98852_1
- libpng=1.6.39=h753d276_0
- libpq=15.4=hfc447b1_1
- libsanitizer=13.2.0=h7e041cc_2
- libsndfile=1.2.2=hbc2eb40_0
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.43.0=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-devel_linux-64=13.2.0=ha9c7c90_2
- libstdcxx-ng=13.2.0=h7e041cc_2
- libsystemd0=254=h3516f8a_0
- libtiff=4.6.0=h29866fb_1
- libuuid=2.38.1=h0b41bf4_0
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp-base=1.3.2=hd590300_0
- libxcb=1.15=h0b41bf4_0
- libxkbcommon=1.5.0=h5d7e998_3
- libxml2=2.11.5=h232c23b_1
- libzlib=1.2.13=hd590300_5
- lz4-c=1.9.4=hcb278e6_0
- make=4.3=hd18ef5c_1
- matplotlib-base=3.8.0=py310h62c0568_1
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mistune=3.0.1=pyhd8ed1ab_0
- mpg123=1.31.3=hcb278e6_0
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-common=8.0.33=hf1915f5_4
- mysql-libs=8.0.33=hca2cd23_4
- nbclient=0.8.0=pyhd8ed1ab_0
- nbconvert=7.8.0=pyhd8ed1ab_0
- nbconvert-core=7.8.0=pyhd8ed1ab_0
- nbconvert-pandoc=7.8.0=pyhd8ed1ab_0
- nbformat=5.9.2=pyhd8ed1ab_0
- ncurses=6.4=hcb278e6_0
- notebook=7.0.4=pyhd8ed1ab_0
- notebook-shim=0.2.3=pyhd8ed1ab_0
- nspr=4.35=h27087fc_0
- nss=3.92=h1d7d5a4_0
- openjpeg=2.5.0=h488ebb8_3
- openssl=3.1.3=hd590300_0
- overrides=7.4.0=pyhd8ed1ab_0
- packaging=23.1=pyhd8ed1ab_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- pango=1.50.14=ha41ecd1_2
- parso=0.8.3=pyhd8ed1ab_0
- patsy=0.5.3=pyhd8ed1ab_0
- pcre2=10.40=hc3806b6_0
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pillow=10.0.1=py310h29da1c1_1
- pip=23.2.1=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
- platformdirs=3.10.0=pyhd8ed1ab_0
- prometheus_client=0.17.1=pyhd8ed1ab_0
- prompt-toolkit=3.0.39=pyha770c72_0
- prompt_toolkit=3.0.39=hd8ed1ab_0
- psutil=5.9.5=py310h2372a71_1
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pulseaudio-client=16.1=hb77b528_5
- pure_eval=0.2.2=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.16.1=pyhd8ed1ab_0
- pyparsing=3.1.1=pyhd8ed1ab_0
- pyqt=5.15.9=py310h04931ad_5
- pyqt5-sip=12.12.2=py310hc6cd4ac_5
- pysocks=1.7.1=pyha2e5f31_6
- python=3.10.10=he550d4f_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.18.0=pyhd8ed1ab_0
- python-json-logger=2.0.7=pyhd8ed1ab_0
- python_abi=3.10=4_cp310
- pytz=2023.3.post1=pyhd8ed1ab_0
- pyyaml=6.0.1=py310h2372a71_1
- pyzmq=25.1.1=py310h5bbb5d0_1
- qt-main=5.15.8=hc47bfe8_16
- qtconsole=5.4.4=pyhd8ed1ab_0
- qtconsole-base=5.4.4=pyha770c72_0
- qtpy=2.4.0=pyhd8ed1ab_0
- r=4.3=r43hd8ed1ab_1007
- r-base=4.3.1=h639d9d3_5
- r-boot=1.3_28.1=r43hc72bb7e_1
- r-class=7.3_22=r43h57805ef_1
- r-cluster=2.1.4=r43h61816a4_1
- r-codetools=0.2_19=r43hc72bb7e_1
- r-foreign=0.8_85=r43h57805ef_0
- r-kernsmooth=2.23_22=r43h13b3f57_0
- r-lattice=0.21_8=r43h57805ef_1
- r-locfit=1.5_9.8=r43h57805ef_1
- r-mass=7.3_60=r43h57805ef_1
- r-matrix=1.6_1.1=r43h316c678_0
- r-mgcv=1.9_0=r43h316c678_0
- r-nlme=3.1_163=r43h61816a4_0
- r-nnet=7.3_19=r43h57805ef_1
- r-rcpp=1.0.11=r43h7df8631_0
- r-recommended=4.3=r43hd8ed1ab_1006
- r-rpart=4.1.19=r43h57805ef_1
- r-spatial=7.3_17=r43h57805ef_0
- r-statmod=1.5.0=r43hd8f1df9_1
- r-survival=3.5_7=r43h57805ef_0
- readline=8.2=h8228510_1
- referencing=0.30.2=pyhd8ed1ab_0
- requests=2.31.0=pyhd8ed1ab_0
- rfc3339-validator=0.1.4=pyhd8ed1ab_0
- rfc3986-validator=0.1.1=pyh9f0ad1d_0
- rpds-py=0.10.3=py310hcb5633a_0
- sed=4.8=he412f7d_0
- send2trash=1.8.2=pyh41d4057_0
- setuptools=68.2.2=pyhd8ed1ab_0
- sip=6.7.11=py310hc6cd4ac_1
- six=1.16.0=pyh6c4a22f_0
- sniffio=1.3.0=pyhd8ed1ab_0
- soupsieve=2.5=pyhd8ed1ab_1
- stack_data=0.6.2=pyhd8ed1ab_0
- statannotations=0.6.0=pyhd8ed1ab_0
- statsmodels=0.14.0=py310h278f3c1_1
- sysroot_linux-64=2.12=he073ed8_16
- terminado=0.17.1=pyh41d4057_0
- tinycss2=1.2.1=pyhd8ed1ab_0
- tk=8.6.13=h2797004_0
- tktable=2.10=h0c5db8f_4
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.1=pyhd8ed1ab_0
- tornado=6.3.3=py310h2372a71_1
- traitlets=5.10.0=pyhd8ed1ab_0
- typing-extensions=4.8.0=hd8ed1ab_0
- typing_extensions=4.8.0=pyha770c72_0
- typing_utils=0.1.0=pyhd8ed1ab_0
- unicodedata2=15.1.0=py310h2372a71_0
- uri-template=1.3.0=pyhd8ed1ab_0
- wcwidth=0.2.6=pyhd8ed1ab_0
- webcolors=1.13=pyhd8ed1ab_0
- webencodings=0.5.1=pyhd8ed1ab_2
- websocket-client=1.6.3=pyhd8ed1ab_0
- wheel=0.41.2=pyhd8ed1ab_0
- widgetsnbextension=4.0.9=pyhd8ed1ab_0
- xcb-util=0.4.0=hd590300_1
- xcb-util-image=0.4.0=h8ee46fc_1
- xcb-util-keysyms=0.4.0=h8ee46fc_1
- xcb-util-renderutil=0.3.9=hd590300_1
- xcb-util-wm=0.4.1=h8ee46fc_1
- xkeyboard-config=2.39=hd590300_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.1.1=hd590300_0
- xorg-libsm=1.2.4=h7391055_0
- xorg-libx11=1.8.6=h8ee46fc_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.11=hd590300_0
- xorg-libxt=1.3.0=hd590300_1
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xf86vidmodeproto=2.3.1=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- zeromq=4.3.4=h9c3ff4c_1
- zipp=3.17.0=pyhd8ed1ab_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hfc55251_0
- pip:
- absl-py==2.0.0
- accessible-pygments==0.0.4
- adjusttext==0.8
- aiohttp==3.8.5
- aiohttp-cors==0.7.0
- aiosignal==1.3.1
- alabaster==0.7.13
- anndata==0.9.2
- annoy==1.17.3
- ansiwrap==0.8.4
- appdirs==1.4.4
- arboreto==0.1.6
- astor==0.8.1
- async-timeout==4.0.3
- attr==0.3.2
- autograd==1.6.2
- autograd-gamma==0.5.0
- bbknn==1.6.0
- bidict==0.22.1
- bioservices==1.11.2
- blessed==1.20.0
- blosc2==2.0.0
- bokeh==3.2.2
- boltons==23.0.0
- bs4==0.0.1
- cachetools==5.3.1
- cattrs==23.1.2
- certifi==2023.7.22
- chex==0.1.83
- click==8.1.7
- cloudpickle==2.2.1
- cnmf==1.3.4
- colorama==0.4.6
- colorful==0.5.5
- colorlog==6.7.0
- comut==0.0.3
- cryptography==41.0.4
- ctxcore==0.2.0
- cycler==0.11.0
- cython==0.29.36
- cytoolz==0.12.2
- dask==2023.9.2
- decoupler==1.5.0
- deprecated==1.2.14
- dill==0.3.7
- distlib==0.3.7
- distributed==2023.9.2
- docutils==0.18.1
- easydev==0.12.1
- et-xmlfile==1.1.0
- fastcluster==1.2.6
- fbpca==1.0
- filelock==3.12.4
- fonttools==4.42.1
- formulaic==0.6.6
- frozendict==2.3.8
- frozenlist==1.4.0
- fsspec==2023.9.2
- future==0.18.3
- gensim==4.3.2
- geosketch==1.2
- gevent==23.9.1
- globre==0.1.5
- google-api-core==2.11.1
- google-auth==2.23.0
- googleapis-common-protos==1.60.0
- gpustat==1.1.1
- greenlet==2.0.2
- grequests==0.7.0
- grpcio==1.58.0
- gseapy==0.10.8
- h5py==3.9.0
- harmonypy==0.0.9
- igraph==0.10.8
- imageio==2.31.4
- imagesize==1.4.1
- interface-meta==1.3.0
- interlap==0.2.7
- intervaltree==3.1.0
- ipympl==0.9.3
- ipython-genutils==0.2.0
- jax==0.4.17
- jaxlib==0.4.17
- joblib==1.3.2
- jsonpickle==3.0.2
- kaleido==0.2.1
- lazy-loader==0.3
- lda==2.0.0
- leidenalg==0.10.1
- levenshtein==0.21.1
- liana==1.0.0a2
- lifelines==0.27.8
- llvmlite==0.41.0
- locket==1.0.0
- loompy==3.0.7
- loomxpy==0.4.2
- lxml==4.9.3
- lz4==4.3.2
- macs2==2.2.9.1
- markdown-it-py==3.0.0
- markupsafe==2.0.1
- matplotlib==3.7.3
- mdurl==0.1.2
- mizani==0.9.3
- ml-dtypes==0.3.1
- mofax==0.3.6
- msgpack==1.0.6
- mudata==0.2.3
- multidict==6.0.4
- multiprocessing-on-dill==3.5.0a4
- muon==0.1.5
- natsort==8.4.0
- nbsphinx==0.9.3
- nbsphinx-link==1.3.0
- ncls==0.0.68
- nest-asyncio==1.5.8
- networkx==3.1
- numba==0.58.0
- numexpr==2.8.6
- numpy==1.23.3
- numpy-groupies==0.10.1
- numpydoc==1.5.0
- nvidia-ml-py==12.535.108
- opencensus==0.11.3
- opencensus-context==0.1.3
- openpyxl==3.1.2
- opt-einsum==3.3.0
- palettable==3.3.3
- pandas==1.5.0
- pandoc==2.3
- papermill==2.4.0
- partd==1.4.0
- pbr==3.1.1
- plotly==5.17.0
- plotnine==0.12.3
- plottable==0.1.5
- plumbum==1.8.2
- ply==3.11
- polars==0.19.3
- progressbar2==4.2.0
- protobuf==4.24.3
- py-cpuinfo==9.0.0
- py-spy==0.3.14
- pyarrow==13.0.0
- pyasn1==0.5.0
- pyasn1-modules==0.3.0
- pybedtools==0.9.1
- pybigwig==0.3.22
- pybiomart==0.2.0
- pydantic==1.10.12
- pydata-sphinx-theme==0.14.1
- pydot==1.4.2
- pyfasta==0.5.2
- pygam==0.9.0
- pynndescent==0.5.10
- pyopenssl==23.2.0
- pyranges==0.0.127
- pysam==0.21.0
- pyscenic==0.12.1
- python-igraph==0.10.8
- python-levenshtein==0.21.1
- python-utils==3.8.0
- pyvis==0.3.2
- pywavelets==1.4.1
- rapidfuzz==3.3.1
- ray==2.7.0
- requests-cache==1.1.0
- rich==13.6.0
- rpy2==3.5.14
- rsa==4.9
- scanorama==1.7.3
- scanpy==1.9.5
- scib==1.1.4
- scib-metrics==0.4.0
- scikit-image==0.21.0
- scikit-learn==1.3.1
- scikit-misc==0.1.4
- scipy==1.11.2
- scrublet==0.2.3
- seaborn==0.11.0
- session-info==1.0.0
- signaturescoring==0.1.0
- smart-open==6.4.0
- snowballstemmer==2.2.0
- sorted-nearest==0.0.39
- sortedcontainers==2.4.0
- sphinx==6.2.1
- sphinx-book-theme==1.0.1
- sphinx-rtd-theme==1.3.0
- sphinxcontrib-applehelp==1.0.7
- sphinxcontrib-devhelp==1.0.5
- sphinxcontrib-htmlhelp==2.0.4
- sphinxcontrib-jquery==4.1
- sphinxcontrib-jsmath==1.0.1
- sphinxcontrib-qthelp==1.0.6
- sphinxcontrib-serializinghtml==1.1.9
- statistics==1.0.3.5
- stdlib-list==0.9.0
- suds-community==1.1.2
- tables==3.8.0
- tabulate==0.9.0
- tbb==2021.10.0
- tblib==2.0.0
- tenacity==8.2.3
- texttable==1.6.7
- textwrap3==0.9.2
- threadpoolctl==3.2.0
- tifffile==2023.9.18
- tmtoolkit==0.12.0
- toolz==0.12.0
- tqdm==4.66.1
- tspex==0.6.3
- typing==3.7.4.3
- tzdata==2023.3
- tzlocal==5.0.1
- umap-learn==0.5.4
- url-normalize==1.4.3
- urllib3==1.26.16
- velocyto==0.17.17
- virtualenv==20.21.0
- wrapt==1.15.0
- xgboost==2.0.3
- xlrd==2.0.1
- xmltodict==0.13.0
- xyzservices==2023.7.0
- yarl==1.9.2
- zict==3.0.0
- zope-event==5.0
- zope-interface==6.0
prefix: /cluster/home/jyates/mambaforge/envs/scenicenv