Create data-to-dwc.yml

.github/workflows/data-to-dwc.yml

@@ -0,0 +1,44 @@
+name: Convert CSV files to Darwin Core compliant event and occurrence files
+
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+jobs:
+  generate-data:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2 # Checkout branch into the runner
+      - uses: r-lib/actions/setup-r@master # Set up R runtime
+        with:
+          r-version: 'release'
+
+      - name: Setup renv # Set up R env to install packages
+        run: |
+          install.packages('remotes')
+          remotes::install_github("rstudio/renv")
+        shell: Rscript {0}
+
+      - uses: actions/cache@v2 # Cache packages so won't be compiled everytime job is run
+        with:
+          path: ~/.local/share/renv
+          key: ${{ runner.os }}-renv-${{ hashFiles('**/renv.lock') }}
+          restore-keys: |
+            ${{ runner.os }}-renv-
+            
+      - name: Install dependencies # Install the dependencies eg. Dplyr, tidyverse etc
+        run: renv::restore()
+        shell: Rscript {0}
+
+      - name: Generate data # Run the script
+        run: source("R/data_to_dwc.R")
+        shell: Rscript {0}
+
+      - name: Commit files # Commit changes
+        run: |
+          git config --local user.email "[email protected]"
+          git config --local user.name "GitHub Actions"
+          git add .
+          git diff-index --quiet HEAD || (git commit -m "update data" && git push)