data-to-dwc.yml

name: Convert CSV files to Darwin Core compliant event and occurrence files

on:
  push:
    branches: [main, master]
  pull_request:
    branches: [main, master]

jobs:
  generate-data:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v2 # Checkout branch into the runner
      - uses: r-lib/actions/setup-r@master # Set up R runtime
        with:
          r-version: 'release'
          
      - name: Setup renv # Set up R env to install packages
        run: |
          install.packages('remotes')
          remotes::install_github("rstudio/renv")
        shell: Rscript {0}
        
      - uses: actions/cache@v2 # Cache packages so won't be compiled everytime job is run
        with:
          path: ~/.local/share/renv
          key: ${{ runner.os }}-renv-${{ hashFiles('**/renv.lock') }}
          restore-keys: |
            ${{ runner.os }}-renv-
            
      - name: Install dependencies # Install the dependencies eg. Dplyr, tidyverse etc
        run: renv::restore()
        shell: Rscript {0}

      - name: Generate data # Run the script
        run: source("R/data_to_dwc.R")
        shell: Rscript {0}
      
      - name: Commit files # Commit changes
        run: |
          git config --local user.email "actions@github.com"
          git config --local user.name "GitHub Actions"
          git add .
          git diff-index --quiet HEAD || (git commit -m "update data" && git push)