test gh action #2

	name: Convert CSV files to Darwin Core compliant event and occurrence files

	on:
	push:
	branches: [main, master]
	pull_request:
	branches: [main, master]

	jobs:
	generate-data:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2 # Checkout branch into the runner
	- uses: r-lib/actions/setup-r@master # Set up R runtime
	with:
	r-version: 'release'

	- name: Setup renv # Set up R env to install packages
	run: \|
	install.packages('remotes')
	remotes::install_github("rstudio/renv")
	shell: Rscript {0}

	- uses: actions/cache@v2 # Cache packages so won't be compiled everytime job is run
	with:
	path: ~/.local/share/renv
	key: ${{ runner.os }}-renv-${{ hashFiles('**/renv.lock') }}
	restore-keys: \|
	${{ runner.os }}-renv-

	- name: Install dependencies # Install the dependencies eg. Dplyr, tidyverse etc
	run: renv::restore()
	shell: Rscript {0}

	- name: Generate data # Run the script
	run: source("R/data_to_dwc.R")
	shell: Rscript {0}

	- name: Commit files # Commit changes
	run: \|
	git config --local user.email "[email protected]"
	git config --local user.name "GitHub Actions"
	git add .
	git diff-index --quiet HEAD \|\| (git commit -m "update data" && git push)

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