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NEWS
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NEWS
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* version 2.2
- Modified bilinear interpolation to generalized bilinear interpolation that can deal with rectangular plot and non (0;0) origin corner plot
- Added check_plot_coord function which will replace correctCoordGPS() :
- calculation of projected coordinates of plot corners depend on trust_GPS_corners argument : if TRUE, a bilinear interpolation is applied (after averaging plot corners and removing outliers) to retrieve tree projected coordinates, if FALSE a procrust analyses is applied as before
- rangeX and rangeY are no longer needed : they are calculated using relative coordinates dimensions of the plot corners
- a ggplot is returned as output instead of a plot of the plot
- calculation of the projected coordinates of the trees is done, using tree_df and tree_coords arguments
- Added divide_plot function which will replace cutPlot()
- No corner numerotation is needed anymore, neither dimX and dimY (the dimensions of the plot)
- plot division is made on relative coordinates and then transformed in projected coordinates (if supplied) with a bilinear interpolation
- trees are attributed to each subplot using tree_df and tree_coords agruments
- Message warning if the grid dimensions don't match the plot dimensions
- Used of the argument grid_tol to control the plot area which is included in the grid
- The grid can be plot-centred using centred_grid argument
- Added subplot_summary which will replace summaryByPlot
- the function can take any tree metric using the value argument
- any valid function can be applied as a summary
- a ggplot is returned as output instead of just plot the plot division
- Added "Spatialized trees and forest stands metrics with BIOMASS" vignette which will replace the "Manage trees and plot coordinates with BIOMASS" vignette
* version 2.1.14
- Fix an issue about the inversion of subplot locations in cutPlot
- Change the automatic corner numbering from counter-clockwise to clockise direction in cutPlot
- Fix an issue with summaryByPlot when a plot do not contains any tree
- Replace the procrust analyses used to calculate sub-plot corners with a bilinear interpolation that takes the coordinates of the projected plot corners as references.
* version 2.1.13
- Activate pkgdown
* version 2.1.12
- fix missing export of function predictHeight
* version 2.1.11
- Move from httr to httr2 package for correctTaxo
- Replace sp and raster dependencies by sf and terra
* version 2.1.10
- Add a graceful failure message in case of API or connection failure to match the CRAN policy
* version 2.1.9
- Change of the reference dataset in correctTaxo function to avoid a bug (tropicos was no longer maintained)
- Add a graceful failure message in case of API or connection failure to match the CRAN policy
* version 2.1.7
- Remove the as.vector to match the latest development versions of R
* version 2.1.6
- Fit the CRAN policies regarding the cache management by defaulting location to
R session temp folder (issue #30)
- Use function createCache to activate a permanent cache
- clearCache function allows to clear or remove permanent cache folder
- Avoid all tests based on downloading rasters (E and bioclim parameters)
* version 2.1.5
- updated TNRS API request code in correctTaxo (issue #25)
* version 2.1.4
- replaced taxosaurus with TNRS for name resolution in correctTaxo
- spell check documentation (thank you Mauro)
- fix an issue with summaryByPlot when a plot contains a single tree
- added fetching accepted names in correctTaxo
- removed unneeded dependencies on usethis, taxize, covr, rvest, MCMCglmm and lmfor
* version 2.1.3
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* version 2.1.2
- Modified dataset for compatibility issues with new rgdal package
* version 2.1
- bugs correction
- add a vignette for the managment of the plot
- add few tricks for the summaryByPlot
- add of a function to convert tree relative to absolute coordinates
* version 2.0
- code optimization of most functions
- new functions: computeFeldRegion, attributeTree, correctCoordGPS, cutPlot, latlong2UTM, numberCorner, summaryByPlot, updateCache
- Re-writing of the dataset Karnataka forest, there were missing stems in the previous version of this database
* version 1.2
- Duplicated genera from the plantList have been fixed in the "genusFamily" dataset (e.g. The family Jungermanniaceae was given for the genus Massularia, now the dataset gives the Rubiaceae family)
* version 1.1
- The NouraguesHD dataset has now taxonomic information
- The warning message from the computeAGB function has been removed
- The correctTaxo function have been slightly modified to handle species names not recognized by TNRS
- The getWoodDensity function has been slightly modified to deal with NA values in addWoodDensityData, which is now a data.frame of three colums and not four (the family column is now internaly built).
- The computeAGB and AGBmonteCarlo functions have an additional argument: Dlim (see help).
- The AGBmonteCarlo function has now an option to propagate error up to the carbon estimate (see the argument Carbon).
* version 1.0
Initial version of BIOMASS