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Databricks: rlang/RJSONIO installation error #83

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pdiakumis opened this issue Jun 14, 2023 · 0 comments
Open

Databricks: rlang/RJSONIO installation error #83

pdiakumis opened this issue Jun 14, 2023 · 0 comments
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@pdiakumis
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Setting up dracarys on a DB cluster, installs fine but need to lock in {rlang} and {RJSONIO} beforehand:

> dracarys::TsoTmbTraceTsvFile$new(url1)

Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : 
  namespace ‘rlang’ 1.0.6 is already loaded, but >= 1.1.0 is required
# before installing dracarys
> sessionInfo()
R version 4.2.2 Patched (2022-11-10 r83330)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 22.04.2 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so

locale:
 [1] LC_CTYPE=C.UTF-8       LC_NUMERIC=C           LC_TIME=C.UTF-8       
 [4] LC_COLLATE=C.UTF-8     LC_MONETARY=C.UTF-8    LC_MESSAGES=C.UTF-8   
 [7] LC_PAPER=C.UTF-8       LC_NAME=C              LC_ADDRESS=C          
[10] LC_TELEPHONE=C         LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C   

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] SparkR_3.4.0   compiler_4.2.2 Rserve_1.8-12 

Solution:

install.packages("RJSONIO")
devtools::install_github("umccr/dracarys", upgrade_dependencies = FALSE, dependencies = FALSE)

Will experiment a bit with the custom Docker setup at some point.

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