diff --git a/.github/workflows/build_jupyter_nextflow_image.yml b/.github/workflows/build_jupyter_nextflow_image.yml
index 7c9ec0be..abf56048 100644
--- a/.github/workflows/build_jupyter_nextflow_image.yml
+++ b/.github/workflows/build_jupyter_nextflow_image.yml
@@ -3,7 +3,7 @@ name: Build and Push Jupyter-Nextflow image
on:
push:
paths:
- - jupyter-nextflow/Dockerfile
+ - jupyter-nextflow
- .github/workflows/build_jupyter_nextflow_image.yml
jobs:
diff --git a/jupyter-nextflow/Dockerfile b/jupyter-nextflow/Dockerfile
index f66d9d4e..0a2e815a 100644
--- a/jupyter-nextflow/Dockerfile
+++ b/jupyter-nextflow/Dockerfile
@@ -56,3 +56,7 @@ COPY --chown=jovyan:users resources/jupyter_notebook_config.py /home/$NB_USER/.j
RUN cat /home/$NB_USER/.jupyter/tmp.py >> /home/$NB_USER/.jupyter/jupyter_notebook_config.py && rm /home/$NB_USER/.jupyter/tmp.py
RUN mamba install -yc bioconda nextflow==22.10.6
+
+# welcome page
+ADD --chown=jovyan:users nextflow-welcome.html /home/$NB_USER/
+RUN touch /home/$NB_USER/nextflow-welcome.html
diff --git a/jupyter-nextflow/nextflow-welcome.html b/jupyter-nextflow/nextflow-welcome.html
new file mode 100644
index 00000000..290c1fef
--- /dev/null
+++ b/jupyter-nextflow/nextflow-welcome.html
@@ -0,0 +1,59 @@
+
+
+
+
This is your personal workspace. The "pd" folder represents your
+ persistent drive:
+
+ - The files you save here will still be available when you come back
+ after terminating your workspace session.
+
- Any personal files outside of this folder will be lost.
+
+
+
If you are new to Nextflow, visit nextflow.io for detailed information.
+
+
This workspace is set up to run Nextflow workflows in AWS Batch. Your
+ Nextflow configuration must include the Batch queue, IAM role ARN and work
+ directory that were created for you automatically. The sample configuration
+ file will allow you to run simple workflows and can be adapted to your
+ needs. To get started:
+
+
+ - Open a new "Launcher" tab and open a terminal.
+
- You can find your sample configuration file in the "data" directory.
+ Copy it to a new "nextflow.config" file by running this command in the
+ terminal:
cp
+ ./data/sample-nextflow-config.txt ./nextflow.config
+ - Launch a Hello World workflow by running this command in the terminal:
+
nextflow run hello
+
+