diff --git a/.github/workflows/build_jupyter_nextflow_image.yml b/.github/workflows/build_jupyter_nextflow_image.yml index 7c9ec0be..abf56048 100644 --- a/.github/workflows/build_jupyter_nextflow_image.yml +++ b/.github/workflows/build_jupyter_nextflow_image.yml @@ -3,7 +3,7 @@ name: Build and Push Jupyter-Nextflow image on: push: paths: - - jupyter-nextflow/Dockerfile + - jupyter-nextflow - .github/workflows/build_jupyter_nextflow_image.yml jobs: diff --git a/jupyter-nextflow/Dockerfile b/jupyter-nextflow/Dockerfile index f66d9d4e..0a2e815a 100644 --- a/jupyter-nextflow/Dockerfile +++ b/jupyter-nextflow/Dockerfile @@ -56,3 +56,7 @@ COPY --chown=jovyan:users resources/jupyter_notebook_config.py /home/$NB_USER/.j RUN cat /home/$NB_USER/.jupyter/tmp.py >> /home/$NB_USER/.jupyter/jupyter_notebook_config.py && rm /home/$NB_USER/.jupyter/tmp.py RUN mamba install -yc bioconda nextflow==22.10.6 + +# welcome page +ADD --chown=jovyan:users nextflow-welcome.html /home/$NB_USER/ +RUN touch /home/$NB_USER/nextflow-welcome.html diff --git a/jupyter-nextflow/nextflow-welcome.html b/jupyter-nextflow/nextflow-welcome.html new file mode 100644 index 00000000..290c1fef --- /dev/null +++ b/jupyter-nextflow/nextflow-welcome.html @@ -0,0 +1,59 @@ + + +Nextflow Workspace + + +

Welcome to the Nextflow Workspace

+
+

This is your personal workspace. The "pd" folder represents your + persistent drive:

+ +

Get started with Nextflow

+

If you are new to Nextflow, visit nextflow.io for detailed information. +

+

This workspace is set up to run Nextflow workflows in AWS Batch. Your + Nextflow configuration must include the Batch queue, IAM role ARN and work + directory that were created for you automatically. The sample configuration + file will allow you to run simple workflows and can be adapted to your + needs. To get started: +

+ +