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Colabfold #257

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PopeJohnXXIV opened this issue Mar 4, 2024 · 1 comment
Open

Colabfold #257

PopeJohnXXIV opened this issue Mar 4, 2024 · 1 comment
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build-request Request to build software ebrecipe-available Though not necessarily a supported toolchain, there is an EB recipe available to attempt to install onhold On hold: requires newer version or other dependency

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@PopeJohnXXIV
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Colabfold is very similar to alphafold but has some additional features such as the ability to select a specific template to use in predictions. A link to installation instructions is presented here: https://github.com/YoshitakaMo/localcolabfold. I believe that the main difficulty in installing this program is that it requires a conda enviroment.
@dsajdak dsajdak added build-request Request to build software ebrecipe-available Though not necessarily a supported toolchain, there is an EB recipe available to attempt to install labels Mar 6, 2024
@dsajdak dsajdak self-assigned this Mar 7, 2024
@dsajdak dsajdak added the onhold On hold: requires newer version or other dependency label Mar 15, 2024
@dsajdak
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dsajdak commented Mar 15, 2024

This is on hold until a newer version of tensorflow is available so that we can upgrade to a newer version of Alphafold and Colabfold. There are several versions of colabfold that work with the necessary dependencies currently available in ccrsoft/2023.01; however despite successfully installing, they don't run due to a python library issue.

@dsajdak dsajdak removed their assignment Mar 28, 2024
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build-request Request to build software ebrecipe-available Though not necessarily a supported toolchain, there is an EB recipe available to attempt to install onhold On hold: requires newer version or other dependency
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