requirements.txt

accelerate==0.30.1
aiohttp==3.9.5
aiosignal==1.3.1
attrs==23.2.0
bio==1.7.1
biopython==1.83
biothings-client==0.3.1
biotite==0.40.0
certifi==2024.2.2
charset-normalizer==3.3.2
click==8.1.7
contourpy==1.2.1
cycler==0.12.1
datasets==2.19.1
dill==0.3.8
docker-pycreds==0.4.0
einops==0.8.0
filelock==3.14.0
fonttools==4.52.1
frozenlist==1.4.1
fsspec==2024.3.1
gitdb==4.0.11
gitpython==3.1.43
gprofiler-official==1.0.0
huggingface-hub==0.23.1
idna==3.7
jinja2==3.1.4
joblib==1.4.2
kiwisolver==1.4.5
lightning==2.2.5
lightning-utilities==0.11.2
markupsafe==2.1.5
matplotlib==3.9.0
mpmath==1.3.0
msgpack==1.0.8
multidict==6.0.5
multiprocess==0.70.16
mygene==3.2.2
networkx==3.3
numpy==1.26.4
nvidia-cublas-cu12==12.1.3.1
nvidia-cuda-cupti-cu12==12.1.105
nvidia-cuda-nvrtc-cu12==12.1.105
nvidia-cuda-runtime-cu12==12.1.105
nvidia-cudnn-cu12==8.9.2.26
nvidia-cufft-cu12==11.0.2.54
nvidia-curand-cu12==10.3.2.106
nvidia-cusolver-cu12==11.4.5.107
nvidia-cusparse-cu12==12.1.0.106
nvidia-nccl-cu12==2.20.5
nvidia-nvjitlink-cu12==12.5.40
nvidia-nvtx-cu12==12.1.105
packaging==24.0
pandas==2.2.2
pillow==10.3.0
platformdirs==4.2.2
pooch==1.8.1
protobuf==4.25.3
psutil==5.9.8
pyarrow==16.1.0
pyarrow-hotfix==0.6
pyparsing==3.1.2
python-dateutil==2.9.0.post0
pytorch-lightning==2.2.5
pytz==2024.1
pyyaml==6.0.1
rdkit==2023.9.6
regex==2024.5.15
requests==2.32.2
safetensors==0.4.3
scikit-learn==1.5.0
scipy==1.13.1
seaborn==0.13.2
sentry-sdk==2.3.1
setproctitle==1.3.3
six==1.16.0
smmap==5.0.1
sympy==1.12
threadpoolctl==3.5.0
tokenizers==0.19.1
torch==2.3.0
torch-geometric==2.5.3
torchaudio==2.3.0
torchmetrics==1.4.0.post0
torchvision==0.18.0
tqdm==4.66.4
transformers==4.41.1
typing-extensions==4.12.0
tzdata==2024.1
urllib3==2.2.1
wandb==0.17.0
xxhash==3.4.1
yarl==1.9.4