DESCRIPTION

Package: conumee2.0
Title: Enhanced copy-number variation analysis using Illumina DNA methylation
    arrays for humans and mice
Version: 2.0
Author: Bjarne Daenekas, Volker Hovestadt, Marc Zapatka
Maintainer: Volker Hovestadt <conumee@hovestadt.bio>
Address: Department of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, USA
Description: This package contains a set of processing and plotting methods
    for performing copy-number variation (CNV) analysis using Illumina 450k, EPIC or Mouse
    methylation arrays.
Imports:
    methods,
    stats,
    DNAcopy,
    rtracklayer,
    GenomicRanges,
    IRanges,
    GenomeInfoDb
Depends:
    R (>= 3.5.0),
    minfi,
    IlluminaHumanMethylation450kmanifest,
    IlluminaHumanMethylation450kanno.ilmn12.hg19,
    IlluminaHumanMethylationEPICmanifest,
    IlluminaHumanMethylationEPICanno.ilm10b4.hg19,
    RnBeads,
    illuminaio,
    nullranges
Suggests:
    BiocStyle,
    knitr,
    rmarkdown,
    minfiData,
    CopyNumber450kData,
    RCurl
Encoding: UTF-8
License: GPL (>= 2)
LazyData: false
Collate:
    classes.R
    annotation.R
    load.R
    process.R
    output.R
    data.R
biocViews: CopyNumberVariation, DNAMethylation, MethylationArray, Microarray,
    Normalization, Preprocessing, QualityControl, Software
VignetteBuilder: knitr
RoxygenNote: 7.2.3