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NEWS.md

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UMIcountR 0.5.0

  • new functions to process complex molecular spike-in set
  • add complex spike-in set barcode annotation (molspike_barcodes_infos_fivep_final)

UMIcountR 0.2.2

Handle some unexpected situations.

UMIcountR 0.2.1

Fix implementation of ngram by passing split UMI length correctly.

UMIcountR 0.2.0

  • Large change in the error correction utilities. Now builds on BK-Tree datastructure for massive increase in computational efficiency in UMI error corrections. Builds on pybktree package in python called via reticulate.

UMIcountR 0.1.2

  • Add option to subset the length of the spUMI when loading.
  • Correct handling of gene name / contig when loading.
  • Removed bug with hd1 of spUMI.
  • Fix bug if ggrastr not installed.

UMIcountR 0.1.1

  • Add biocViews attribute for correct installation behavior.

UMIcountR 0.1.0

  • Initial version of the UMIcountR package with extract_spike_dat, get_overrepresented_spikes, plot_spike_distances, return_corrected_umi and subsample_recompute functions.