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failed to create a plot #6

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lvbakker opened this issue Nov 24, 2020 · 3 comments
Open

failed to create a plot #6

lvbakker opened this issue Nov 24, 2020 · 3 comments

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@lvbakker
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Hi,
I installed dotploty and i am trying to run the examples provided.
But both the minimap2 and the nucmer example seem to have some issues.

minimap2_failed_output.txt
mummer_failed_output.txt

What am i missing here? Can someone help me with this?
thank you

@haneenih7
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I am getting the same error.
it's so disappointing to see the issue is open since November and has not been solved.

@gconcepcion
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FYI - I had this same error and it was caused by having improper character in my sample names. In my case it was a # sign.

Solved the problem with a simple substitution
sed -is 's/#/_/g' input.paf

@briannadon
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confirming I had this same problem and a "#" in my sample names was the culprit, thanks for your answer @gconcepcion . Perhaps a warning in the README telling people to be very careful that their sample has no special characters in the name is in order!

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4 participants