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protein-annotation

Here are 13 public repositories matching this topic...

GMOD / jbrowse

JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

bioinformatics genomics biology genome-annotation genome-browser protein-annotation

Updated Mar 21, 2024
JavaScript

westlake-repl / ProTrek

ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning

protein-annotation protein-alignment mmseqs2 protein-prediction contrastive-learning protein-language-model protein-pretraining foldseek sequence-structure

Updated Nov 29, 2024
Python

elttaes / Revisiting-PLMs

Exploring Evolution-aware & free protein language models as protein function predictors

benchmark pytorch contact-prediction stability multiple-sequence-alignment protein-annotation function-prediction protein-classification alphafold protein-language-model alphafold2 fitness-prediction zero-shot-prediction msa-construction msa-transformer esm1b remote-homology-detection metal-ion-binding

Updated Sep 28, 2024
Python

raghavagps / Pfeature

A software package for computing features of peptides and proteins

bioinformatics machine-learning-algorithms protein-annotation amino-acid-composition function-annotation pssm-profile

Updated Jun 7, 2024
Python

PedroMTQ / mantis

A package to annotate protein sequences

bioinformatics mantis hmmer protein-function-prediction protein-annotation

Updated Jul 7, 2024
Python

cmbi / metadome

MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.

genetics proteins gene-annotation genes pathogenicity variant-annotations protein-domains pathogenic-variants protein-annotation genetic-tolerance domain-homology variant-interpretation

Updated Mar 10, 2023
Python

PedroMTQ / UniFunc

Tool for similarity analysis of protein function annotations.

nlp text-mining bioinformatics bioinformatics-analysis protein-annotation

Updated Mar 2, 2022
Python

raghavagps / exopropred

An ensemble method for predicting proteins secreted via exosomes

bioinformatics machine-learning-algorithms protein-annotation subcellular-location-prediction exosomal-proteins

Updated Oct 10, 2023
Python

holsapple / bioinformatics-hodgepodge

an assortment of bioinformatics inspired Python scripts

bioinformatics genetic-drift protein-annotation bioinformatics-tool

Updated Apr 15, 2017
Python

MDhewei / mFASD

Novel method for specific metal-binding sites prediction with known 3D structure.

metal-binding-prediction protein-annotation

Updated Jan 22, 2021
Python

EBI-Metagenomics / deciphon_web

React webapp to submit and retrieve jobs from Deciphon – a protein prediction tool for nanopore reads

react protein-annotation nanopore-sequencing

Updated Nov 11, 2024
JavaScript

psipred / biod3

Protein annotation web graphics lib

d3 protein-annotation

Updated Feb 22, 2024
JavaScript

hamalcij / pfamannot

Protein Family Annotator

unix bioinformatics uniprot pfam protein-annotation

Updated Mar 17, 2023
C

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