Ontology for the description of human clinical features

Information and scripts for the CropAndWeed Dataset

Self-Supervised Vision Transformers for multiplexed imaging datasets

Plant Phenotyping APP

Minimum Information About a Plant Phenotyping Experiment

Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.

3-Demeter Capture is a tool for building 3-D point clouds from images

Sentinel-2 Crop Trait Retrieval Using Physiological and Phenological Priors from Field Phenotyping (Graf et al., 2023, RSE)

Standard terms for annotating mammalian phenotypic data

Internationalisation of the HPO content

HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇

PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.

Web-interface to the Biofuel Ecophysiological Traits and Yields Database (used by PEcAn and TERRA REF)

Implementation of the 3D reconstruction pipeline optimized for plant branching structures.

Software program for generating synthetic datasets for genotypes and phenotypes

A python package for agricultural phenotypic trait extraction from 2D image sets via 3D reconstruction and analysis of 3D point clouds.

A phenotyping pipeline for Python

Scanomatic

An imaging library to detect and track future position of ears on maize plants