Near-optimal RNA-Seq quantification

A single-cell RNAseq pipeline for 10X genomics data

A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing

A guide to using a Seurat object in conjunction with RNA Velocity

kallisto | bustools workflow for pre-processing single-cell RNA-seq data

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools

RNA-seq analyses.

Running state-of-the-art RNA-seq abundance quantification software "kallisto" on UPMEM DPU system

Automated and friendly RNA-seq analysis (deprecated)

Experiment illustrating how Nextflow can make biological pipelines reproducible

Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto

Iso-seq and Kallisto integration

RNAseq pipeline examples

Transform, query, and merge tabular files with the expressionable command-line tool. This tool is used primarily for gene-expression data.

Evaluating HISAT2, Salmon and Kallisto alignment using Checkpoint Blockade treated CT26 Experimental Data

Transform, query, and merge tabular files with the expressionable Python module. This tool is used primarily for gene-expression data.

Identification of viral RNA in single-cell RNA sequencing data

kallisto task for RNA-seq workflow

docker file for genomic tools