From ee642eb6392590139477968abea99d5940779c4f Mon Sep 17 00:00:00 2001 From: Tim Vink Date: Mon, 2 Sep 2024 09:49:24 +0000 Subject: [PATCH 1/4] Move to pyproject.toml structure --- .github/workflows/pythonpublish.yml | 3 +- .github/workflows/workflow.yml | 8 +- mkdocs_table_reader_plugin/__init__.py | 0 pyproject.toml | 114 ++++ requirements.txt | 4 + ...t_requirements.txt => requirements_dev.txt | 2 +- setup.py | 35 -- src/mkdocs_table_reader_plugin/__init__.py | 1 + .../mkdocs_table_reader_plugin}/markdown.py | 0 .../mkdocs_table_reader_plugin}/plugin.py | 0 .../mkdocs_table_reader_plugin}/readers.py | 0 .../mkdocs_table_reader_plugin}/safe_eval.py | 0 .../mkdocs_table_reader_plugin}/utils.py | 0 uv.lock | 540 ++++++++++++++++++ 14 files changed, 662 insertions(+), 45 deletions(-) delete mode 100644 mkdocs_table_reader_plugin/__init__.py create mode 100644 pyproject.toml create mode 100644 requirements.txt rename tests/test_requirements.txt => requirements_dev.txt (96%) delete mode 100644 setup.py create mode 100644 src/mkdocs_table_reader_plugin/__init__.py rename {mkdocs_table_reader_plugin => src/mkdocs_table_reader_plugin}/markdown.py (100%) rename {mkdocs_table_reader_plugin => src/mkdocs_table_reader_plugin}/plugin.py (100%) rename {mkdocs_table_reader_plugin => src/mkdocs_table_reader_plugin}/readers.py (100%) rename {mkdocs_table_reader_plugin => src/mkdocs_table_reader_plugin}/safe_eval.py (100%) rename {mkdocs_table_reader_plugin => src/mkdocs_table_reader_plugin}/utils.py (100%) create mode 100644 uv.lock diff --git a/.github/workflows/pythonpublish.yml b/.github/workflows/pythonpublish.yml index 347a153..85c7dbd 100644 --- a/.github/workflows/pythonpublish.yml +++ b/.github/workflows/pythonpublish.yml @@ -27,8 +27,7 @@ jobs: - name: Make sure unit tests succeed run: | - pip install -r tests/test_requirements.txt - pip install . + pip install ".[dev]" pytest - name: Build diff --git a/.github/workflows/workflow.yml b/.github/workflows/workflow.yml index 5d7c7ce..dedfdc8 100644 --- a/.github/workflows/workflow.yml +++ b/.github/workflows/workflow.yml @@ -15,15 +15,9 @@ jobs: with: python-version: ${{ matrix.python-version }} - - name: Static code checking with pyflakes - run: | - pip install pyflakes - pyflakes mkdocs_table_reader_plugin - - name: Run unit tests run: | - pip install -r tests/test_requirements.txt - pip install -e . + pip install ".[dev]" pytest --cov=mkdocs_table_reader_plugin --cov-report=xml - name: Upload coverage to Codecov diff --git a/mkdocs_table_reader_plugin/__init__.py b/mkdocs_table_reader_plugin/__init__.py deleted file mode 100644 index e69de29..0000000 diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..0b056d7 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,114 @@ +[build-system] +requires = ["setuptools>=70.0", "setuptools-scm>=8.0"] +build-backend = "setuptools.build_meta" + +[project.entry-points."mkdocs.plugins"] +"table-reader" = "mkdocs_table_reader_plugin.plugin:TableReaderPlugin" + +[project] +name="mkdocs_table_reader_plugin" +keywords = ["mkdocs", "plugin"] +authors = [ + { name = "Tim Vink", email = "vinktim@gmail.com" } +] +license = { text = "MIT" } + +description="MkDocs plugin to directly insert tables from files into markdown." +readme = { file = "README.md", content-type = "text/markdown" } + +requires-python=">=3.8" + +classifiers=[ + "Operating System :: OS Independent", + "Programming Language :: Python", + "Programming Language :: Python :: 3", + "Programming Language :: Python :: 3.8", + "Programming Language :: Python :: 3.9", + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", + "License :: OSI Approved :: MIT License", +] + +dynamic = ["version","dependencies","optional-dependencies"] + +[project.urls] +"Homepage" = "https://github.com/timvink/mkdocs-table-reader-plugin" + +[tool.setuptools.dynamic] +version = {attr = "mkdocs_table_reader_plugin.__version__"} + +dependencies={file = ["requirements.txt"]} + +optional-dependencies.dev={file = ["requirements_dev.txt"]} +optional-dependencies.base={file = ["requirements.txt"]} +optional-dependencies.all={file = ["requirements.txt", "requirements_dev.txt"]} + +[tool.pytest.ini_options] +markers = [ + "integration: marks tests as integration, meaning they use databases (deselect with '-m \"not integration\"')", + "serial", + "no_temp_caching", +] + +# https://github.com/charliermarsh/ruff +[tool.ruff] + +# Rules to apply +lint.select= ["E", "F", "I", "UP"] + +# Exclude rules +lint.ignore = ['D104' + ,'D212' + ,'D200' + ,'D412' + ,'E731' + ,'E501' + ,'E722' + ,'D104' + ,'E402' + ,"UP038" # UP038 Use `X | Y` in `isinstance` call instead of `(X, Y)` +] + +# Exclude files in tests dir +lint.exclude = [ + ".bzr", + ".direnv", + ".eggs", + ".git", + ".hg", + ".mypy_cache", + ".nox", + ".pants.d", + ".pytype", + ".ruff_cache", + ".svn", + ".tox", + ".venv", + "__pypackages__", + "_build", + "buck-out", + "build", + "dist", + "node_modules", + "venv", +] + +# Set line length, keep same as black +line-length = 120 + +extend-exclude = [ + "*.yml", + "*.toml", + "*.md", + ".json", + "Makefile", + "*.txt", +] + + #supported for python 3.10 +target-version = "py310" + +[tool.uv] +dev-dependencies = [ + "ruff", +] diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 0000000..bb6e779 --- /dev/null +++ b/requirements.txt @@ -0,0 +1,4 @@ +mkdocs>=1.0 +pandas>=1.1 +tabulate>=0.8.7 +PyYAML>=5.4.1 \ No newline at end of file diff --git a/tests/test_requirements.txt b/requirements_dev.txt similarity index 96% rename from tests/test_requirements.txt rename to requirements_dev.txt index db9f2b7..6d2bbdc 100644 --- a/tests/test_requirements.txt +++ b/requirements_dev.txt @@ -6,7 +6,7 @@ xlrd>=1.0.0 openpyxl pyarrow # linting -pyflakes +ruff # documentation mkdocs-macros-plugin mkdocs-material diff --git a/setup.py b/setup.py deleted file mode 100644 index ecd1904..0000000 --- a/setup.py +++ /dev/null @@ -1,35 +0,0 @@ -from setuptools import setup, find_packages - -with open("README.md", "r") as fh: - long_description = fh.read() - -setup( - name="mkdocs-table-reader-plugin", - version="3.1.0", - description="MkDocs plugin to directly insert tables from files into markdown.", - long_description=long_description, - long_description_content_type="text/markdown", - keywords="mkdocs plugin", - url="https://github.com/timvink/mkdocs-table-reader-plugin", - author="Tim Vink", - author_email="vinktim@gmail.com", - license="MIT", - python_requires=">=3.8", - classifiers=[ - "Operating System :: OS Independent", - "Programming Language :: Python", - "Programming Language :: Python :: 3", - "Programming Language :: Python :: 3.8", - "Programming Language :: Python :: 3.9", - "Programming Language :: Python :: 3.10", - "Programming Language :: Python :: 3.11", - "License :: OSI Approved :: MIT License", - ], - install_requires=["mkdocs>=1.0", "pandas>=1.1", "tabulate>=0.8.7", "PyYAML>=5.4.1"], - packages=find_packages(), - entry_points={ - "mkdocs.plugins": [ - "table-reader = mkdocs_table_reader_plugin.plugin:TableReaderPlugin" - ] - }, -) diff --git a/src/mkdocs_table_reader_plugin/__init__.py b/src/mkdocs_table_reader_plugin/__init__.py new file mode 100644 index 0000000..cbe6191 --- /dev/null +++ b/src/mkdocs_table_reader_plugin/__init__.py @@ -0,0 +1 @@ +__version__ = "3.1.0" \ No newline at end of file diff --git a/mkdocs_table_reader_plugin/markdown.py b/src/mkdocs_table_reader_plugin/markdown.py similarity index 100% rename from mkdocs_table_reader_plugin/markdown.py rename to src/mkdocs_table_reader_plugin/markdown.py diff --git a/mkdocs_table_reader_plugin/plugin.py b/src/mkdocs_table_reader_plugin/plugin.py similarity index 100% rename from mkdocs_table_reader_plugin/plugin.py rename to src/mkdocs_table_reader_plugin/plugin.py diff --git a/mkdocs_table_reader_plugin/readers.py 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replace_unescaped_pipes(text: str) -> str: """ @@ -19,7 +19,7 @@ def replace_unescaped_pipes(text: str) -> str: return re.sub(r"(? str: +def convert_to_md_table(df: pd.DataFrame, **markdown_kwargs: dict) -> str: """ Convert dataframe to markdown table using tabulate. """ diff --git a/src/mkdocs_table_reader_plugin/plugin.py b/src/mkdocs_table_reader_plugin/plugin.py index 62ab21b..e482548 100644 --- a/src/mkdocs_table_reader_plugin/plugin.py +++ b/src/mkdocs_table_reader_plugin/plugin.py @@ -1,12 +1,12 @@ import re -from mkdocs.plugins import BasePlugin, get_plugin_logger from mkdocs.config import config_options from mkdocs.exceptions import ConfigurationError +from mkdocs.plugins import BasePlugin, get_plugin_logger +from mkdocs_table_reader_plugin.markdown import add_indentation, convert_to_md_table, fix_indentation +from mkdocs_table_reader_plugin.readers import MACROS, READERS from mkdocs_table_reader_plugin.safe_eval import parse_argkwarg -from mkdocs_table_reader_plugin.readers import READERS, MACROS -from mkdocs_table_reader_plugin.markdown import fix_indentation, add_indentation, convert_to_md_table logger = get_plugin_logger("table-reader") @@ -138,7 +138,7 @@ def on_page_markdown(self, markdown, page, config, files, **kwargs): # match group 0: to extract any leading whitespace # match group 1: to extract the arguments (positional and keywords) tag_pattern = re.compile( - r"( *)\{\{\s+%s\((.+)\)\s+\}\}" % reader, flags=re.IGNORECASE + r"( *)\{\{\s+{reader}\((.+)\)\s+\}\}" % reader, flags=re.IGNORECASE ) matches = re.findall(tag_pattern, markdown) diff --git a/src/mkdocs_table_reader_plugin/readers.py b/src/mkdocs_table_reader_plugin/readers.py index 2144d62..e60f25d 100644 --- a/src/mkdocs_table_reader_plugin/readers.py +++ b/src/mkdocs_table_reader_plugin/readers.py @@ -1,13 +1,13 @@ -import pandas as pd -import yaml +import functools +import logging import os from pathlib import Path -import logging -import functools +import pandas as pd +import yaml -from mkdocs_table_reader_plugin.utils import kwargs_in_func, kwargs_not_in_func from mkdocs_table_reader_plugin.markdown import convert_to_md_table +from mkdocs_table_reader_plugin.utils import kwargs_in_func, kwargs_not_in_func logger = logging.getLogger("mkdocs.plugins") @@ -134,14 +134,14 @@ def read_excel(*args, **kwargs) -> str: @ParseArgs def pd_read_yaml(*args, **kwargs) -> str: json_kwargs = kwargs_in_func(kwargs, pd.json_normalize) - with open(args[0], "r") as f: + with open(args[0]) as f: df = pd.json_normalize(yaml.safe_load(f), **json_kwargs) return df @ParseArgs def read_yaml(*args, **kwargs) -> str: json_kwargs = kwargs_in_func(kwargs, pd.json_normalize) - with open(args[0], "r") as f: + with open(args[0]) as f: df = pd.json_normalize(yaml.safe_load(f), **json_kwargs) markdown_kwargs = kwargs_not_in_func(kwargs, pd.json_normalize) @@ -170,7 +170,7 @@ def read_raw(*args, **kwargs) -> str: Returns: str: file contents """ - with open(args[0], "r") as f: + with open(args[0]) as f: return f.read() From f2d6f703d4a03cd08f6f27e5e9664100add1ae66 Mon Sep 17 00:00:00 2001 From: Tim Vink Date: Mon, 2 Sep 2024 09:59:00 +0000 Subject: [PATCH 3/4] Revert "Do ruff check --fix" This reverts commit f8ecaadbeb37f621180b4f76585c3525b50fdab2. --- src/mkdocs_table_reader_plugin/markdown.py | 6 +++--- src/mkdocs_table_reader_plugin/plugin.py | 8 ++++---- src/mkdocs_table_reader_plugin/readers.py | 16 ++++++++-------- 3 files changed, 15 insertions(+), 15 deletions(-) diff --git a/src/mkdocs_table_reader_plugin/markdown.py b/src/mkdocs_table_reader_plugin/markdown.py index 856a3c6..bc66c6f 100644 --- a/src/mkdocs_table_reader_plugin/markdown.py +++ b/src/mkdocs_table_reader_plugin/markdown.py @@ -1,7 +1,7 @@ import re -import textwrap - +from typing import Dict import pandas as pd +import textwrap def replace_unescaped_pipes(text: str) -> str: @@ -19,7 +19,7 @@ def replace_unescaped_pipes(text: str) -> str: return re.sub(r"(? str: +def convert_to_md_table(df: pd.DataFrame, **markdown_kwargs: Dict) -> str: """ Convert dataframe to markdown table using tabulate. """ diff --git a/src/mkdocs_table_reader_plugin/plugin.py b/src/mkdocs_table_reader_plugin/plugin.py index e482548..62ab21b 100644 --- a/src/mkdocs_table_reader_plugin/plugin.py +++ b/src/mkdocs_table_reader_plugin/plugin.py @@ -1,12 +1,12 @@ import re +from mkdocs.plugins import BasePlugin, get_plugin_logger from mkdocs.config import config_options from mkdocs.exceptions import ConfigurationError -from mkdocs.plugins import BasePlugin, get_plugin_logger -from mkdocs_table_reader_plugin.markdown import add_indentation, convert_to_md_table, fix_indentation -from mkdocs_table_reader_plugin.readers import MACROS, READERS from mkdocs_table_reader_plugin.safe_eval import parse_argkwarg +from mkdocs_table_reader_plugin.readers import READERS, MACROS +from mkdocs_table_reader_plugin.markdown import fix_indentation, add_indentation, convert_to_md_table logger = get_plugin_logger("table-reader") @@ -138,7 +138,7 @@ def on_page_markdown(self, markdown, page, config, files, **kwargs): # match group 0: to extract any leading whitespace # match group 1: to extract the arguments (positional and keywords) tag_pattern = re.compile( - r"( *)\{\{\s+{reader}\((.+)\)\s+\}\}" % reader, flags=re.IGNORECASE + r"( *)\{\{\s+%s\((.+)\)\s+\}\}" % reader, flags=re.IGNORECASE ) matches = re.findall(tag_pattern, markdown) diff --git a/src/mkdocs_table_reader_plugin/readers.py b/src/mkdocs_table_reader_plugin/readers.py index e60f25d..2144d62 100644 --- a/src/mkdocs_table_reader_plugin/readers.py +++ b/src/mkdocs_table_reader_plugin/readers.py @@ -1,13 +1,13 @@ -import functools -import logging +import pandas as pd +import yaml import os from pathlib import Path +import logging -import pandas as pd -import yaml +import functools -from mkdocs_table_reader_plugin.markdown import convert_to_md_table from mkdocs_table_reader_plugin.utils import kwargs_in_func, kwargs_not_in_func +from mkdocs_table_reader_plugin.markdown import convert_to_md_table logger = logging.getLogger("mkdocs.plugins") @@ -134,14 +134,14 @@ def read_excel(*args, **kwargs) -> str: @ParseArgs def pd_read_yaml(*args, **kwargs) -> str: json_kwargs = kwargs_in_func(kwargs, pd.json_normalize) - with open(args[0]) as f: + with open(args[0], "r") as f: df = pd.json_normalize(yaml.safe_load(f), **json_kwargs) return df @ParseArgs def read_yaml(*args, **kwargs) -> str: json_kwargs = kwargs_in_func(kwargs, pd.json_normalize) - with open(args[0]) as f: + with open(args[0], "r") as f: df = pd.json_normalize(yaml.safe_load(f), **json_kwargs) markdown_kwargs = kwargs_not_in_func(kwargs, pd.json_normalize) @@ -170,7 +170,7 @@ def read_raw(*args, **kwargs) -> str: Returns: str: file contents """ - with open(args[0]) as f: + with open(args[0], "r") as f: return f.read() From cc8cab7a51dafdecfde8d5f5000b7ac8742042c5 Mon Sep 17 00:00:00 2001 From: Tim Vink Date: Mon, 2 Sep 2024 10:04:20 +0000 Subject: [PATCH 4/4] Ruff fixes --- pyproject.toml | 3 +++ src/mkdocs_table_reader_plugin/markdown.py | 6 +++--- src/mkdocs_table_reader_plugin/plugin.py | 8 ++++---- src/mkdocs_table_reader_plugin/readers.py | 16 ++++++++-------- src/mkdocs_table_reader_plugin/safe_eval.py | 3 +-- 5 files changed, 19 insertions(+), 17 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 0b056d7..97a5c6a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -108,6 +108,9 @@ extend-exclude = [ #supported for python 3.10 target-version = "py310" +# Always autofix +fix = true + [tool.uv] dev-dependencies = [ "ruff", diff --git a/src/mkdocs_table_reader_plugin/markdown.py b/src/mkdocs_table_reader_plugin/markdown.py index bc66c6f..856a3c6 100644 --- a/src/mkdocs_table_reader_plugin/markdown.py +++ b/src/mkdocs_table_reader_plugin/markdown.py @@ -1,8 +1,8 @@ import re -from typing import Dict -import pandas as pd import textwrap +import pandas as pd + def replace_unescaped_pipes(text: str) -> str: """ @@ -19,7 +19,7 @@ def replace_unescaped_pipes(text: str) -> str: return re.sub(r"(? str: +def convert_to_md_table(df: pd.DataFrame, **markdown_kwargs: dict) -> str: """ Convert dataframe to markdown table using tabulate. """ diff --git a/src/mkdocs_table_reader_plugin/plugin.py b/src/mkdocs_table_reader_plugin/plugin.py index 62ab21b..a195d36 100644 --- a/src/mkdocs_table_reader_plugin/plugin.py +++ b/src/mkdocs_table_reader_plugin/plugin.py @@ -1,12 +1,12 @@ import re -from mkdocs.plugins import BasePlugin, get_plugin_logger from mkdocs.config import config_options from mkdocs.exceptions import ConfigurationError +from mkdocs.plugins import BasePlugin, get_plugin_logger +from mkdocs_table_reader_plugin.markdown import add_indentation, convert_to_md_table, fix_indentation +from mkdocs_table_reader_plugin.readers import MACROS, READERS from mkdocs_table_reader_plugin.safe_eval import parse_argkwarg -from mkdocs_table_reader_plugin.readers import READERS, MACROS -from mkdocs_table_reader_plugin.markdown import fix_indentation, add_indentation, convert_to_md_table logger = get_plugin_logger("table-reader") @@ -138,7 +138,7 @@ def on_page_markdown(self, markdown, page, config, files, **kwargs): # match group 0: to extract any leading whitespace # match group 1: to extract the arguments (positional and keywords) tag_pattern = re.compile( - r"( *)\{\{\s+%s\((.+)\)\s+\}\}" % reader, flags=re.IGNORECASE + r"( *)\{\{\s+%s\((.+)\)\s+\}\}" % reader, flags=re.IGNORECASE # noqa: UP031 ) matches = re.findall(tag_pattern, markdown) diff --git a/src/mkdocs_table_reader_plugin/readers.py b/src/mkdocs_table_reader_plugin/readers.py index 2144d62..e60f25d 100644 --- a/src/mkdocs_table_reader_plugin/readers.py +++ b/src/mkdocs_table_reader_plugin/readers.py @@ -1,13 +1,13 @@ -import pandas as pd -import yaml +import functools +import logging import os from pathlib import Path -import logging -import functools +import pandas as pd +import yaml -from mkdocs_table_reader_plugin.utils import kwargs_in_func, kwargs_not_in_func from mkdocs_table_reader_plugin.markdown import convert_to_md_table +from mkdocs_table_reader_plugin.utils import kwargs_in_func, kwargs_not_in_func logger = logging.getLogger("mkdocs.plugins") @@ -134,14 +134,14 @@ def read_excel(*args, **kwargs) -> str: @ParseArgs def pd_read_yaml(*args, **kwargs) -> str: json_kwargs = kwargs_in_func(kwargs, pd.json_normalize) - with open(args[0], "r") as f: + with open(args[0]) as f: df = pd.json_normalize(yaml.safe_load(f), **json_kwargs) return df @ParseArgs def read_yaml(*args, **kwargs) -> str: json_kwargs = kwargs_in_func(kwargs, pd.json_normalize) - with open(args[0], "r") as f: + with open(args[0]) as f: df = pd.json_normalize(yaml.safe_load(f), **json_kwargs) markdown_kwargs = kwargs_not_in_func(kwargs, pd.json_normalize) @@ -170,7 +170,7 @@ def read_raw(*args, **kwargs) -> str: Returns: str: file contents """ - with open(args[0], "r") as f: + with open(args[0]) as f: return f.read() diff --git a/src/mkdocs_table_reader_plugin/safe_eval.py b/src/mkdocs_table_reader_plugin/safe_eval.py index 24db2f8..c41d541 100644 --- a/src/mkdocs_table_reader_plugin/safe_eval.py +++ b/src/mkdocs_table_reader_plugin/safe_eval.py @@ -111,8 +111,7 @@ def parse_argkwarg(input_str: str): else: if len(kwargs) != 0: raise AssertionError( - "[table-reader-plugin] Make sure the python in your reader tag is correct: Positional arguments follow keyword arguments in '%s'" - % input_str + f"[table-reader-plugin] Make sure the python in your reader tag is correct: Positional arguments follow keyword arguments in '{input_str}'" ) args.append(literal_eval(i))