MALIS

Structured loss function for supervised learning of segmentation and clustering

Python and MATLAB wrapper for C++ functions for computing the MALIS loss

The MALIS loss is described here:

SC Turaga, KL Briggman, M Helmstaedter, W Denk, HS Seung (2009). Maximin learning of image segmentation. Advances in Neural Information Processing Systems (NIPS) 2009.

http://papers.nips.cc/paper/3887-maximin-affinity-learning-of-image-segmentation

Note that you have to have the c++ library boost installed (on ubuntu you can install it with "sudo apt-get install libboost-all-dev").