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index.Rmd
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---
title: "Tampa Bay Estuary Program (TBEP) GitHub Website"
output:
html_document:
includes:
after_body: footer.html
---
Site build `r Sys.Date()`
Want to contribute to this page? Create an issue [here](https://github.com/tbep-tech/tbep-tech.github.io/issues/new/choose).
# {.tabset}
## Repositories
- [github.com/tbep-tech](https://github.com/tbep-tech/): GitHub organization
- [](https://github.com/tbep-tech/tbep-tech.github.io/actions) [tbep-tech.github.io](https://github.com/tbep-tech/tbep-tech.github.io): files for this GitHub website
- [](https://github.com/tbep-tech/data-management-sop/actions) [data-management-sop](https://tbep-tech.github.io/data-management-sop): TBEP data management SOP
- [](https://github.com/tbep-tech/tbep-refs/actions) [tbep-refs](https://github.com/tbep-tech/tbep-refs/): Comprehensive bibliography of TBEP publications, formatted [here](https://tbep-tech.github.io/tbep-refs/)
- [](https://github.com/tbep-tech/tbeptools/actions) [tbeptools](https://tbep-tech.github.io/tbeptools/): R package with utility functions for reading, analyzing, and visualizing TBEP data. See the [vignette](https://tbep-tech.github.io/tbeptools/articles/intro.html) for details on of the package.
- [](https://github.com/tbep-tech/tbeploads/actions) [tbeploads](https://tbep-tech.github.io/tbeploads/): R package for calculating load estimates to Tampa Bay. See the [vignette](https://tbep-tech.github.io/tbeploads/articles/tbeploads.html) for details on the package.
- [](https://github.com/tbep-tech/wqtrends/actions) [wqtrends](https://tbep-tech.github.io/wqtrends/): R package to assess water quality trends for long-term monitoring data in estuaries using Generalized Additive Models. See the [vignette](https://tbep-tech.github.io/wqtrends/articles/introduction.html) for details on the package.
- [](https://github.com/tbep-tech/peptools/actions) [peptools](https://tbep-tech.github.io/peptools/): R package with utility functions for reading, anlayzing, and visualizing Suffolk County monitoring data for the Peconic Estuary Program. See the [vignette](https://tbep-tech.github.io/peptools/articles/Introduction.html) for details on the package.
- [](https://github.com/tbep-tech/github-backup/actions) [github-backup](https://github.com/tbep-tech/github-backup): Repository used to create an archive of all repositories in the tbep-tech GitHub organization page and upload to Amazon S3 services on a weekly basis.
## Reporting
- **Water Quality Report Card**:
- [](https://github.com/tbep-tech/wq-static/actions) [Two-pager](https://tbep-tech.github.io/wq-static/wq.pdf) ([source](https://github.com/tbep-tech/wq-static))\
- [](https://github.com/tbep-tech/wq-dash/actions/workflows/databuild.yaml) [Dashboard](https://shiny.tbep.org/wq-dash/) ([source](https://github.com/tbep-tech/wq-dash/blob/master/wq-dash.Rmd))
- [Vignette](https://tbep-tech.github.io/tbeptools/articles/intro.html)
- **Tidal Creek Report Card**
- [Dashboard](https://shiny.tbep.org/tidalcreek-dash/) ([source](https://github.com/tbep-tech/tidalcreek-dash/blob/master/tidalcreek-dash.Rmd))
- [Vignette](https://tbep-tech.github.io/tbeptools/articles/tidalcreeks.html)
- **Tampa Bay Nekton Index**
- [Dashboard](https://shiny.tbep.org/nekton-dash) ([source](https://github.com/tbep-tech/nekton-dash/blob/master/nekton-dash.Rmd))
- [Vignette](https://tbep-tech.github.io/tbeptools/articles/tbni.html)
- **Seagrass Transect Training Data Dashboard**
- [Dashboard](https://shiny.tbep.org/seagrasstransect) ([source](https://github.com/tbep-tech/seagrasstransect))
- [Vignette](https://tbep-tech.github.io/tbeptools/articles/seagrasstransect.html)
- **Seagrass Transect Dashboard**
- [Dashboard](https://shiny.tbep.org/seagrasstransect-dash) ([source](https://github.com/tbep-tech/seagrasstransect-dash))
- [Vignette](https://tbep-tech.github.io/tbeptools/articles/seagrasstransect.html)
- **Tampa Bay Benthic Index**
- [Dashboard](https://shiny.tbep.org/benthic-dash) ([source](https://github.com/tbep-tech/benthic-dash))
- [Vignette](https://tbep-tech.github.io/tbeptools/articles/tbbi.html)
- **Tampa Bay Watershed Land Use**
- [Website](https://tbep-tech.github.io/landuse/) ([source](https://github.com/tbep-tech/landuse))
- **ANEP congressional districts**
- [Dashboard](https://shiny.tbep.org/anep-congressional/) ([source](https://github.com/tbep-tech/anep-congressional))
- **Equity Plan Mapping**
- [Website](https://tbep-tech.github.io/equity-plan-mapping/) ([source](https://github.com/tbep-tech/equity-plan-mapping))
- **Tampa Bay Valuation Dashboard**
- [Dashboard](https://shiny.tbep.org/tbev-dash) ([source](https://github.com/tbep-tech/tbev-dash))
- **Old Tampa Bay Temperature Loggers**
- [Dashboard](https://tbep-tech.github.io/otb-temp/tempeval) ([source](https://github.com/tbep-tech/otb-temp))
- **TBNMC Annual Compliance Assessments**
- 2022 [](https://github.com/tbep-tech/tbnmc-compliance-assessment-2022/actions) [Website](https://tbep-tech.github.io/tbnmc-compliance-assessment-2022/) ([Source](https://github.com/tbep-tech/tbnmc-compliance-assessment-2022))
- 2021 [](https://github.com/tbep-tech/tbnmc-compliance-assessment-2021/actions) [Website](https://tbep-tech.github.io/tbnmc-compliance-assessment-2021/) ([Source](https://github.com/tbep-tech/tbnmc-compliance-assessment-2021))
- 2020 [](https://github.com/tbep-tech/tbnmc-compliance-assessment-2020/actions) [Website](https://tbep-tech.github.io/tbnmc-compliance-assessment-2020/) ([Source](https://github.com/tbep-tech/tbnmc-compliance-assessment-2020))
- **Piney Point Environmental Monitoring Dashboard**
- [](https://github.com/tbep-tech/piney-point/actions/workflows/databuild.yaml) [Dashboard](https://shiny.tbep.org/piney-point) ([source](https://github.com/tbep-tech/piney-point/index.Rmd))
- [](https://github.com/tbep-tech/piney-point/actions/workflows/lobobuild.yaml) [LOBO dashboard](https://shiny.tbep.org/piney-point/lobo.Rmd) ([source](https://github.com/tbep-tech/piney-point/lobo.Rmd))
- **Piney Point Data Analysis**
- Repository for analyzing Piney Point data ([source](https://github.com/tbep-tech/piney-point-analysis))
- **Ft. DeSota Buoy Data, Pinellas County**
- [](https://github.com/tbep-tech/desoto-buoy/actions) Data management and reporting repository, RESTORE project ([source](https://github.com/tbep-tech/desoto-buoy))
- **Seagrass Transect Water Atlas Content**
- [](https://github.com/tbep-tech/seagrasstransect/actions) Graphics, tables, and downloads for seagrass transect data ([source](https://github.com/tbep-tech/seagrasstransect))
- **TBERF Oyster Restoration Project**
- [](https://github.com/tbep-tech/tberf-oyster/actions) Materials for evaluating TBERF oyster restoration success [Figures](https://tbep-tech.github.io/tberf-oyster/figures.html) ([source](https://github.com/tbep-tech/tberf-oyster))
- **Scallop Search**
- [](https://github.com/tbep-tech/scallop-search/actions) Materials for evaluation and mapping of the Tampa Bay Watch Great Scallop Search [Dashboard](https://tbep-tech.github.io/scallop-search/) ([source](https://github.com/tbep-tech/scallop-search))
- **Verified WBIDs**
- [](https://github.com/tbep-tech/verified-wbids/actions) Materials for evaluation of verified WBIDs in the Tampa Bay watershed [Dashboard](https://tbep-tech.github.io/verified-wbids/) ([source](https://github.com/tbep-tech/verified-wbids)).
- **Load Estimates**
- [](https://github.com/tbep-tech/load-estimates/actions) Materials for creating a unified workflow to synthesize and report on load estimates to Tampa Bay. All estimates were obtained from Janicki Environmental. [Dashboard](https://tbep-tech.github.io/load-estimates/) ([source](https://github.com/tbep-tech/load-estimates)).
## Presentations
- **ANEP Tech Transfer Workshop**
- What is Open Science and Why Should the NEPs Care?, Oct. 29th, 2020 [link](http://tbep-tech.github.io/tbep-os-presentations/os_and_neps.html)
- **Bay-Delta IEP Data Science PWT**
- Bringing open science to Tampa Bay: Reproducible workflows & dynamic documents, Feb. 11th, 2021 [link](https://www.canva.com/design/DAEVdjz5s2M/8Gz2nC9Ss682ZE1IISYmdQ/view?utm_content=DAEVdjz5s2M&utm_campaign=designshare&utm_medium=link&utm_source=publishsharelink)
- **Board meetings**
- Feb. 2020, 2019 water quality report card update: [Management Board](http://tbep-tech.github.io/tbep-os-presentations/wq_report_card_2019.html), [Policy Board](http://tbep-tech.github.io/tbep-os-presentations/wq_report_card_2019_PB.html)
- Nov. 2021, Piney Point Manuscript Update: [link](https://docs.google.com/presentation/d/1Dsqg1RlshDhk_qp_HiwMxPXhQEs8MuiRC9fjwvtElsQ/edit?usp=sharing)
- Feb. 2022, water quality report card and state of the bay update: [link](https://docs.google.com/presentation/d/1gUsIP_Hp2aeH94wip7dkuGGS-zTv79bTWdZ6agSVAvQ/edit?usp=sharing)
- Feb. 2023, water quality report card and state of the bay update (MB): [link](http://tbep-tech.github.io/tbep-os-presentations/state_of_the_bay_2022.html)
- Feb. 2023, water quality report card and state of the bay update (PB): [link](http://tbep-tech.github.io/tbep-os-presentations/state_of_the_bay_2022pb.html)
- Feb. 2024, water quality report card and state of the bay update (MB): [link](http://tbep-tech.github.io/tbep-os-presentations/state_of_the_bay_2023mb.html)
- Feb. 2024, water quality report card and state of the bay update (PB): [link](http://tbep-tech.github.io/tbep-os-presentations/state_of_the_bay_2023pb.html)
- **CERF Seagrass CoP May 2021**
- Providing interactive web access to long-term seagrass monitoring data with open science data analysis tools [link](https://www.canva.com/design/DAEeRJYbYo4/sgG-0xpTq29rVbsr9byh_w/edit?utm_content=DAEeRJYbYo4&utm_campaign=designshare&utm_medium=link2&utm_source=sharebutton)
- **EPA N-STEPS Webinar Oct 2022**
- Better nutrient management through open science: A collection of tales from California and Florida [link](https://docs.google.com/presentation/d/1PydleljTAkKBGft_LcP_cG_sunZbW8OSjuQiVf4XO0k/edit?usp=sharing)
- **Habitat Restoration Consortium**
- May 2020, HMPU workflow, updating, and web products: Reproducible tools for tracking progress [link](https://docs.google.com/presentation/d/1ZXKppCgevY6NYE45VSUwHwb4O2InEOL5nKVay7nzn6o/edit?usp=sharing)
- **Joint Aquatic Sciences Meetings 2022**
- How the Tampa Bay Estuary Program Uses Open Science to Work Smarter, Not Harder, May 16th, 2022 [link](https://docs.google.com/presentation/d/14_R59dGyY7YPBBZxb5rMFt2tvLXMtCNkPE26L4unQs0/edit?usp=sharing)
- **National Water Quality Monitoring Conference 2023**
- Using Open Science to Address Current and Future Threats to the Health of Tampa Bay, April 27th, 2023 [link](https://docs.google.com/presentation/d/1Ri529XJtA8UfbpzvkYy5p_TXtDPoNs-g_t6R34-xcDM/edit?usp=sharing)
- **NERRS Ecosystem Metabolism Webinar Aug 2020**
- Methods and tools to measure ecosystem metabolism [link](http://tbep-tech.github.io/tbep-os-presentations/metab_tools.html)
- **NMC meetings**
- 2022 seagrass and water quality report results [link](https://tbep-tech.github.io/tbep-os-presentations/seagrass_and_wq_nmc22.html)
- 2022 provisional water quality report card [link](https://tbep-tech.github.io/tbep-os-presentations/wq_report_card_2022_updates.html)
- 2023 provisional water quality report card [link](https://tbep-tech.github.io/tbep-os-presentations/wq_report_card_2023_updates.html)
- 2024 provisional water quality report card [link](https://tbep-tech.github.io/tbep-os-presentations/wq_report_card_2024_updates.html)
- Hydrology and chlorophyll trends in Tampa Bay: Alternative modelling approaches [link](https://tbep-tech.github.io/tbep-os-presentations/chltrends.html)
- **Old Tampa Bay Working Group**
- Jun 2020, Seagrass changes in OTB: Recent shifts and links to water quality [link](https://www.canva.com/design/DAEDfKrp5K4/sxbdGX2nb7lgnnNcQIPIZw/view?utm_content=DAEDfKrp5K4&utm_campaign=designshare&utm_medium=link&utm_source=publishsharelink)
- **Open Science Subcommittee**
- Kickoff webinar, March 2nd, 2020 [link](http://tbep-tech.github.io/tbep-os-presentations/ossubcommittee_kickoff_webinar.html)
- Water Quality Dashboard review summary, May 6th, 2020 [link](http://tbep-tech.github.io/tbep-os-presentations/wq_dashboard_review.html)
- OS updates, Oct 27th, 2020 [link](http://tbep-tech.github.io/tbep-os-presentations/osupdates10272020.html)
- OS updates, Feb 2nd, 2021 [link](http://tbep-tech.github.io/tbep-os-presentations/osupdates02022021.html)
- OS updates, May 4th, 2021 [link](http://tbep-tech.github.io/tbep-os-presentations/osupdates05042021.html)
- OS updates, Aug 3rd, 2021 [link](http://tbep-tech.github.io/tbep-os-presentations/osupdates08032021.html)
- OS updates, Feb 1st, 2022 [link](http://tbep-tech.github.io/tbep-os-presentations/osupdates02012022.html)
- OS updates, May 3rd, 2022 [link](http://tbep-tech.github.io/tbep-os-presentations/osupdates05032022.html)
- OS updates, Aug 2nd, 2022 [link](http://tbep-tech.github.io/tbep-os-presentations/osupdates08022022.html)
- OS updates, Nov 1st, 2022 [link](http://tbep-tech.github.io/tbep-os-presentations/osupdates11012022.html)
- OS updates, May 3rd, 2023 [link](http://tbep-tech.github.io/tbep-os-presentations/osupdates05032023.html)
- OS updates, Aug 2nd, 2023 [link](http://tbep-tech.github.io/tbep-os-presentations/osupdates08022023.html)
- OS updates, Nov 1st, 2023 [link](http://tbep-tech.github.io/tbep-os-presentations/osupdates11012023.html)
- OS updates, May 23rd, 2024 [link](http://tbep-tech.github.io/tbep-os-presentations/osupdates05292024.html)
- OS updates, Dec 10th, 2024 [link](http://tbep-tech.github.io/tbep-os-presentations/osupdates12102024.html)
- **Open Science Workshop Sep 2019**
- What is open science [link](http://tbep-tech.github.io/tbep-os-presentations/what_is_os.html)
- NERRS OS applications [link](http://tbep-tech.github.io/tbep-os-presentations/SWMPrats_pres.html)
- Evolution of open science for the water quality reporting tool [link](http://tbep-tech.github.io/tbep-os-presentations/evolution_reporting.html)
- Overcoming open science challenges [link](http://tbep-tech.github.io/tbep-os-presentations/challenges_for_os.html)
- **PEP Monitoring Collaborative Oct 2020**
- Open source water quality reporting tools for the PEP Monitoring Collaborative [link](http://tbep-tech.github.io/tbep-os-presentations/peptools.html)
- Open source reporting tools for the PEP Monitoring Collaborative: beach pathogens and dissolved oxygen [link](http://tbep-tech.github.io/tbep-os-presentations/peptools2.html)
- **Piney Point**
- Piney Point Data and Analysis, June 15th, 2021 [link](https://tbep-tech.github.io/tbep-os-presentations/piney_point.html#1)
- Coordinated Monitoring of the Piney Point Wastewater Discharge into Tampa Bay: Data Synthesis and Reporting, Nov. 10, 2021 (CERF 2021) [link](https://docs.google.com/presentation/d/18PQ4BKonBdaDPqfzS1bF-L5Gsn2z8qRFC5RxreFxlHY/edit?usp=sharing)
- **Pints of Science Oct 2023**
- Science for the Masses: Using Open Science for Better Decisions to Restore and Protect Tampa Bay [link](https://docs.google.com/presentation/d/1cphkJnifIwnk3-j4yLB2qkYiJl0wLnk5hqOFqnm0aDU/edit?usp=sharing)
- **SBEP TAC meeting Feb 2020**
- Open Science Data Discussion: Red Tide Impact and Response Assessment for Tampa and Sarasota Bay Region [link](http://tbep-tech.github.io/tbep-os-presentations/red_tides_and_open_science.html)
- **SWFL RAMP Meeting Jul 2020**
- Open Science at TBEP: Tidal Tributaries Example [link](http://tbep-tech.github.io/tbep-os-presentations/jul_ramp_pres.html)
- **SWFL Seagrass Working Group**
- Tampa Bay Seagrass Changes: Exploring Trends from 2018 to 2020, Nov. 16, 2021 [link](https://docs.google.com/presentation/d/1DO2l4Ee0GwLmJMLVnS8TQymaFJSZ190aoMgwycVIkzo/edit?usp=sharing)
- **TAC meetings**
- Jan 2024, water quality report card and state of the bay update [link](http://tbep-tech.github.io/tbep-os-presentations/state_of_the_bay_2023.html)
- Oct 2023, Hot and fresh: Pervasive climate stressors of seagrass in Tampa Bay [link](https://docs.google.com/presentation/d/1Vjn-QnxQpEHLM1K8JK1ey1odq-5WXPmGJlBUtsJ1LBQ/edit?usp=sharing)
- Oct 2022, Revised Critical Coastal Habitat Assessment methodology [link](https://docs.google.com/presentation/d/1gpMrYL6MVSoCz7HrPLng5d5vyEfb-_2rN5GkO5HKHno/edit?usp=sharing)
- Jun 2022, Macroalgae trends in Tampa Bay: What we do(n't) know [link](https://docs.google.com/presentation/d/1q95cLUTpk6Mk-vxlvIe68G933pkM83G9-7_C_3d9QRQ/edit?usp=sharing)
- Jan 2022, RSPARROW Tools for End Users, Project Overview and Demo [link](https://docs.google.com/presentation/d/1Fc6BG3YvQ0R1LE0Zgzq4XkLXEKnCFLbQ-ppvpmL6gag/edit?usp=sharing)
- Mar 2021, Open Science Indicator Products: Seagrass transect data and dashboard [link](https://tbep-tech.github.io/tbep-os-presentations/opensci_seagrass.html#1)
- Jun 2020, Tampa Bay Nekton Index: Open Science Integration [link](https://www.canva.com/design/DAD-9OAYHaM/xRSk8VdkFJJ-AzRG646ZgA/view?utm_content=DAD-9OAYHaM&utm_campaign=designshare&utm_medium=link&utm_source=publishsharelink)
- Jan 2020, Open Science Indicator Products: Water Quality and Tidal Tributaries [link](http://tbep-tech.github.io/tbep-os-presentations/opensci_products.html)
- **USF Department of Integrative Biology**
- Piney Point, red tide, and Twitter: A Tampa Bay story, March 30th, 2023 [link](https://docs.google.com/presentation/d/1yfXyuxaXU2CPLWnhtApxDpyS_xuhm9fh29jPpw6MaHE/edit?usp=sharing)
- **USF College of Marine Science**
- How you can do better science in less time: Open science lessons from the Ocean Health Index to Tampa Bay, March 5th, 2021 [link](https://www.canva.com/design/DAEXu-oE6M4/zolcqGmrtxtc3C2Bs1YhOA/view?utm_content=DAEXu-oE6M4&utm_campaign=designshare&utm_medium=link&utm_source=publishsharelink)
- **Virtual Summit Jul 2020**
- Bringing Open Science to Tampa Bay: Reproducible Workflows and Dynamic Documents [link](https://www.canva.com/design/DAEB9tW1m98/y_5oxvuwj5BgoXMkos6G8Q/view?utm_content=DAEB9tW1m98&utm_campaign=designshare&utm_medium=link&utm_source=publishsharelink)
## Resources
### *TBEP Trainings*
- [](https://github.com/tbep-tech/flafs-os-workshop/actions) [Florida AFS open science workshop](https://tbep-tech.github.io/flafs-os-workshop)
- [](https://github.com/tbep-tech/tbep-os-workshop/actions) [TBEP open science workshop](https://tbep-tech.github.io/tbep-os-workshop)
- [](https://github.com/tbep-tech/cerf-os-workshop/actions) [CERF open science workshop](https://tbep-tech.github.io/cerf-os-workshop)
- [](https://github.com/tbep-tech/pep-r-training/actions) [PEP R training](https://tbep-tech.github.io/pep-r-training), [recording](https://drive.google.com/file/d/1ZjVHFrVpw2uTKZw-BmD29umdbl6viutM/view?usp=sharing)
- [](https://github.com/tbep-tech/ecometab-r-training/actions) [NERRS ecocystem metabolism](https://tbep-tech.github.io/ecometab-r-training)
- [](https://github.com/tbep-tech/tbep-r-training/actions) [TBEP June R training](https://tbep-tech.github.io/tbep-r-training/), [recordings](https://www.youtube.com/watch?v=_RI4XMRWeV0&list=PLfJ6-D-exF9RM5TPtT4T0nxieqpr_R4pJ)
- [Writing functions in R](https://tbep-tech.github.io/tbep-r-training/functions.html)
- [R package development workflow](https://tbep-tech.github.io/tbep-r-training/packages.html)
- [A soft introduction to Shiny](https://tbep-tech.github.io/tbep-r-training/shiny.html)
- [Rookery Bay R training (incomplete)](https://tbep-tech.github.io/rookery-bay-training/index.html)
### *R Lessons & Tutorials*
- [DSOS/AEMON-J **Hacking Limnology 2022, supporting open science workshops**](https://aquaticdatasciopensci.github.io/material/){target="_blank"}
- [Software Carpentry: **R for Reproducible Scientific Analysis**](http://data-lessons.github.io/gapminder-R/){target="_blank"}
- [Data Carpentry: **Geospatial Workshop**](https://datacarpentry.org/geospatial-workshop/){target="_blank"}
- [Data Carpentry: **R for Data Analysis and Visualization of Ecological Data**](http://www.datacarpentry.org/R-ecology-lesson/){target="_blank"}
- [Data Carpentry: **Data Organization in Spreadsheets**](http://www.datacarpentry.org/spreadsheet-ecology-lesson/){target="_blank"}
- [**Reproducible Reporting with R (R**$^3$) for Marine Ecological Indicators](https://noaa-iea.github.io/r3-train/){target="_blank"}
- [**R for Water Resources Data Science**](https://www.r4wrds.com/){target="_blank"}
- [**RStudio Webinars**, many topics](https://www.rstudio.com/resources/webinars/){target="_blank"}
- [R For Cats: **Basic introduction site, with cats!**](http://rforcats.net/){target="_blank"}
- [Topical cheatsheets from **RStudio**, also viewed from the help menu](http://www.rstudio.com/resources/cheatsheets/){target="_blank"}
- [Cheatsheet from CRAN of **base R functions**](http://cran.r-project.org/doc/contrib/Short-refcard.pdf){target="_blank"}
- [Totally awesome **R-related artwork** by Allison Horst](https://github.com/allisonhorst/stats-illustrations){target="_blank"}
- [**Color reference** PDF with text names](http://www.stat.columbia.edu/~tzheng/files/Rcolor.pdf){target="_blank"}, [**Color cheatsheet** PDF from NCEAS](https://www.nceas.ucsb.edu/sites/default/files/2020-04/colorPaletteCheatsheet.pdf){target="_blank"}
### *R eBooks/Courses*
- [Jenny Bryan's **Stat545.com**](http://stat545.com/){target="_blank"}
- [Garrett Grolemund and Hadley Wickham's **R For Data Science**](http://r4ds.had.co.nz/){target="_blank"}
- [Chester Ismay and Albert Y. Kim's **Modern DiveR**](https://ismayc.github.io/moderndiver-book/){target="_blank"}
- [Julia Silge and David Robinson **Text Mining with R**](http://tidytextmining.com/){target="_blank"}
- [Hadley Wickham's **Advanced R**](http://adv-r.had.co.nz/){target="_blank"}
- [Hadley Wickham's **R for Data Science**](https://r4ds.had.co.nz){target="_blank"}
- [Yihui Xie **R Markdown: The Definitive Guide**](https://bookdown.org/yihui/rmarkdown/){target="_blank"}
- [Winston Chang **R Graphics Cookbook**](http://www.cookbook-r.com/){target="_blank"}
- [Wegman et al. **Remote Sensing and GIS for Ecologists: Using Open Source Software**](http://book.ecosens.org/RSEbook/){target="_blank"}
- [Lovelace et al. **Geocomputation with R**](https://geocompr.robinlovelace.net/){target="_blank"}
- [Edszer Pebesma and Roger Bivand **Spatial Data Science**](https://keen-swartz-3146c4.netlify.app/index.html){target="_blank"}
### *Git/GitHub*
- [Jenny Bryan's **Happy Git and GitHub for the useR**](http://happygitwithr.com/){target="_blank"}
- [Coding Club **Intro to GitHub**](https://ourcodingclub.github.io/2017/02/27/git.html){target="_blank"}