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insulation score #39
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Hello jimin |
Yes, the figure is showing standardized insulation score for each window. |
I would like to inquire whether the Pearson correlation coefficient (Pearson's r) on the graph represents the correlation coefficient between standardized data or between unstandardized data. |
Hi @1944498970 I don't think standardization changes pearson/spearman correlations. I think the Pearson'r shown is calculated on unnormalized data. |
I am genuinely appreciative that your prompt and effective response has truly resolved my issue. |
Hello,
I noticed there was code for evaluation in issue 29, but I want to ask the specific code used for calculating the insulation score, ''import insulation as insu''.
Additionally, I am intrigued by the visualization presented in Figure 2.d of the ATAC_seq and CTCF. Are the values within each window_size region averaged to generate these plots?
Thanks!
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