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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,179 @@ | ||
| # Run tests using built conda packages. | ||
| name: Build Conda CI (no upload) | ||
|
|
||
| # Run when changes to pip wheel | ||
| on: | ||
| push: | ||
| paths: | ||
| - ".conda/meta.yaml" | ||
| - ".conda_mac/meta.yaml" | ||
| - "setup.py" | ||
| - "requirements.txt" | ||
| - "dev_requirements.txt" | ||
| - "environment_build.yml" | ||
| - ".github/workflows/build_conda_ci.yml" | ||
|
|
||
| # If RUN_BUILD_JOB is set to true, then RUN_ID will be overwritten to the current run id | ||
| env: | ||
| RUN_BUILD_JOB: true | ||
| RUN_ID: 10713717594 # Only used if RUN_BUILD_JOB is false (to dowload build artifact) | ||
|
|
||
| jobs: | ||
| build: | ||
| name: Build package from push (${{ matrix.os }}) | ||
| runs-on: ${{ matrix.os }} | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| os: ["windows-2022", "ubuntu-22.04", "macos-14"] | ||
| # https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstrategymatrixinclude | ||
| include: | ||
| # Use these variables as defaults | ||
| - condarc: .conda/condarc.yaml | ||
| - conda-folder: .conda | ||
| - pyver: "3.10" | ||
| - build-prefix: win | ||
| - os: "ubuntu-22.04" | ||
| build-prefix: linux | ||
| # Use special condarc if macos | ||
| - os: "macos-14" | ||
| condarc: .conda_mac/condarc.yaml | ||
| conda-folder: .conda_mac | ||
| build-prefix: osx | ||
|
|
||
| steps: | ||
| # Setup | ||
| - name: Checkout | ||
| if: env.RUN_BUILD_JOB == 'true' | ||
| uses: actions/checkout@v4 | ||
|
|
||
| - name: Setup Miniconda | ||
| if: env.RUN_BUILD_JOB == 'true' | ||
| uses: conda-incubator/[email protected] | ||
| with: | ||
| miniforge-version: latest | ||
| condarc-file: ${{ matrix.condarc }} | ||
| python-version: ${{ matrix.pyver }} | ||
| environment-file: environment_build.yml | ||
| activate-environment: sleap_ci | ||
| conda-solver: "libmamba" | ||
|
|
||
| - name: Print build environment info | ||
| if: env.RUN_BUILD_JOB == 'true' | ||
| shell: bash -l {0} | ||
| run: | | ||
| which python | ||
| conda list | ||
| pip freeze | ||
| # Build conda package | ||
| - name: Build conda package | ||
| if: env.RUN_BUILD_JOB == 'true' | ||
| shell: bash -l {0} | ||
| run: | | ||
| conda build ${{ matrix.conda-folder }} --output-folder build | ||
| # Upload artifact "tests" can use it | ||
| - name: Upload conda package artifact | ||
| if: env.RUN_BUILD_JOB == 'true' | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: sleap-build-${{ matrix.build-prefix }} | ||
| path: build # Upload entire build directory | ||
| retention-days: 1 | ||
| overwrite: true | ||
|
|
||
| tests: | ||
| name: Run tests using package (${{ matrix.os }}) | ||
| runs-on: ${{ matrix.os }} | ||
| needs: build # Ensure the build job has completed before starting this job. | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| os: ["windows-2022", "ubuntu-22.04", "macos-14"] | ||
| # https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstrategymatrixinclude | ||
| include: | ||
| # Default values | ||
| - build-prefix: win | ||
| - build-suffix: 64 | ||
| - test_args: pytest --durations=-1 tests/ | ||
| - condarc: .conda/condarc.yaml | ||
| - pyver: "3.10" | ||
| - conda-channels: -c conda-forge -c nvidia -c anaconda | ||
| # Ubuntu specific values | ||
| - os: ubuntu-22.04 | ||
| build-prefix: linux | ||
| # Otherwise core dumped in github actions | ||
| test_args: | | ||
| sudo apt install xvfb libxkbcommon-x11-0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-xinerama0 libxcb-xfixes0 | ||
| sudo Xvfb :1 -screen 0 1024x768x24 </dev/null & | ||
| export DISPLAY=":1" | ||
| pytest tests -k 'not exclude_from_linux_pip_test' | ||
| # Use special condarc if macos | ||
| - os: "macos-14" | ||
| build-prefix: osx | ||
| build-suffix: arm64 | ||
| condarc: .conda_mac/condarc.yaml | ||
| conda-channels: -c conda-forge -c anaconda | ||
|
|
||
| steps: | ||
| - name: Checkout repo | ||
| uses: actions/checkout@v4 | ||
|
|
||
| - name: Setup Python | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: ${{ matrix.pyver }} | ||
|
|
||
| - name: Use current run id for conda package download | ||
| shell: bash -l {0} | ||
| if: env.RUN_BUILD_JOB == 'true' | ||
| run: echo "RUN_ID=${{ github.run_id }}" >> $GITHUB_ENV | ||
|
|
||
| # https://github.com/actions/download-artifact?tab=readme-ov-file#usage | ||
| - name: Download conda package artifact | ||
| uses: actions/download-artifact@v4 | ||
| id: download | ||
| with: | ||
| name: sleap-build-${{ matrix.build-prefix }} | ||
| path: build | ||
| run-id: ${{ env.RUN_ID }} | ||
| github-token: ${{ secrets.GITHUB_TOKEN }} | ||
|
|
||
| - name: List items in current directory | ||
| run: | | ||
| ls . | ||
| ls -R build | ||
| - name: Setup Miniconda | ||
| uses: conda-incubator/[email protected] | ||
| with: | ||
| miniforge-version: latest | ||
| condarc-file: ${{ matrix.condarc }} | ||
| python-version: ${{ matrix.pyver }} | ||
| conda-solver: "libmamba" | ||
|
|
||
| - name: Create conda environment | ||
| shell: bash -l {0} | ||
| run: conda create sleap -y -n sleap_ci -c ./build ${{ matrix.conda-channels }} | ||
|
|
||
| - name: Install packages for testing | ||
| shell: bash -l {0} | ||
| run: | | ||
| conda activate sleap_ci | ||
| pip install -r "dev_requirements.txt" | ||
| # Note: "conda activate" does not persist across steps | ||
| - name: Print environment info | ||
| shell: bash -l {0} | ||
| run: | | ||
| conda activate sleap_ci | ||
| conda info | ||
| conda list | ||
| pip freeze | ||
| - name: Test package | ||
| shell: bash -l {0} | ||
| run: | | ||
| conda activate sleap_ci | ||
| ${{ matrix.test_args}} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,71 @@ | ||
| name: Reusable Comment Workflow | ||
|
|
||
| on: | ||
| workflow_call: | ||
| inputs: | ||
| subject_id: | ||
| required: true | ||
| type: string | ||
| body_prefix: | ||
| required: true | ||
| type: string | ||
| comment_type: | ||
| required: true | ||
| type: string | ||
|
|
||
| jobs: | ||
| comment: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Post a comment | ||
| uses: actions/github-script@v6 | ||
| with: | ||
| script: | | ||
| const { owner, repo } = context.repo; | ||
| const subject_id = '${{ inputs.subject_id }}'; | ||
| const comment_type = '${{ inputs.comment_type }}'; | ||
| const baseBody = ` | ||
| We appreciate your input and will review it soon. | ||
| > [!WARNING] | ||
| > A friendly reminder that this is a public forum. Please be cautious when clicking links, downloading files, or running scripts posted by others. | ||
| > | ||
| > - Always verify the credibility of links and code. | ||
| > - Avoid running scripts or installing files from untrusted sources. | ||
| > - If you're unsure, ask for clarification before proceeding. | ||
| Stay safe and happy SLEAPing! | ||
| Best regards, | ||
| The Team | ||
| `; | ||
| const body = `${{ inputs.body_prefix }}\n\n${baseBody}`; | ||
| const mutation = comment_type === 'discussion' | ||
| ? ` | ||
| mutation($discussionId: ID!, $body: String!) { | ||
| addDiscussionComment(input: {discussionId: $discussionId, body: $body}) { | ||
| comment { | ||
| id | ||
| } | ||
| } | ||
| } | ||
| ` | ||
| : ` | ||
| mutation($issueId: ID!, $body: String!) { | ||
| addComment(input: {subjectId: $issueId, body: $body}) { | ||
| commentEdge { | ||
| node { | ||
| id | ||
| body | ||
| } | ||
| } | ||
| } | ||
| } | ||
| `; | ||
| const variables = comment_type === 'discussion' | ||
| ? { discussionId: subject_id, body: body.trim() } | ||
| : { issueId: subject_id, body: body.trim() }; | ||
| await github.graphql(mutation, variables); |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,24 @@ | ||
| name: Comment on New Discussions and Issues | ||
|
|
||
| on: | ||
| discussion: | ||
| types: [created] | ||
| issues: | ||
| types: [opened] | ||
|
|
||
| jobs: | ||
| comment_on_discussion: | ||
| if: github.event_name == 'discussion' | ||
| uses: ./.github/workflows/comment-template.yml | ||
| with: | ||
| subject_id: ${{ github.event.discussion.node_id }} | ||
| body_prefix: "Thank you for starting a new discussion!" | ||
| comment_type: "discussion" | ||
|
|
||
| comment_on_issue: | ||
| if: github.event_name == 'issues' | ||
| uses: ./.github/workflows/comment-template.yml | ||
| with: | ||
| subject_id: ${{ github.event.issue.node_id }} | ||
| body_prefix: "Thank you for opening a new issue!" | ||
| comment_type: "issue" |
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