diff --git a/.gitignore b/.gitignore index decb5cb1..0044d239 100755 --- a/.gitignore +++ b/.gitignore @@ -22,3 +22,4 @@ _targets.R _targets* .DS_Store ._.DS_Store +counts_SE.rda diff --git a/README.Rmd b/README.Rmd index 2c36eba6..863a76b3 100755 --- a/README.Rmd +++ b/README.Rmd @@ -81,8 +81,6 @@ All functions are directly compatibble with `SummarizedExperiment` object. ```{r, echo=FALSE, include=FALSE, } - - library(dplyr) library(tidyr) library(tibble) @@ -108,9 +106,9 @@ my_theme = axis.title.y = element_text(margin = margin(t = 10, r = 10, b = 10, l = 10)) ) - -counts_SE = here("dev/counts_SE.rda") |> load() -tibble_counts = counts_SE %>% tidybulk() %>% as_tibble() +utils::download.file("https://zenodo.org/records/11201167/files/counts_SE.rda?download=1", destfile = "counts_SE.rda") +counts_SE = here("counts_SE.rda") |> load() +tibble_counts = counts_SE %>% as_tibble() ```