_site.yml

name : "HDDA"
title : "High Dimensional Data Analysis (HDDA)"
navbar:
  title: "HDDA"
  left:
    - icon: fa-home
      href: index.html
    - text: "Lectures"
      icon: fa-chalkboard-teacher
      menu:
      - text: "1. Introduction"
        href: intro.html
      - text: "2. Singular Value Decomposition"
        href: svd.html
      - text: "3. Prediction with High Dimensional Predictors"
        href: prediction.html
      - text: "4. Sparse Singular Value Decomposition"
        href: sparseSvd.html
      - text: "5. Linear Discriminant Analysis"
        href: lda.html
      - text: "6.1. Introduction to Clustering"
        href: hclust.html
      - text: "6.2. Paper Model-based Clustering"
        href: https://sites.stat.washington.edu/people/raftery/Research/PDF/fraley1998.pdf
      - text: "6.3. EM algorithm"
        href: em.html
      - text: "7. Large Scale Inference"
        href: lsi.html
    - text: "Labs"
      icon: fa-laptop
      menu:
      - text: "Lab 1: Intro & SVD"
        href: Lab1-Intro-SVD.html
      - text: "Lab 2: SVD - PCA"
        href: Lab2-PCA.html
      - text: "Lab 3: Prediction"
        href: Lab3-Penalized-Regression.html
      - text: "Lab 4: Sparse PCA & LDA"
        href: Lab4-Sparse-PCA-LDA.html
      - text: "Lab 5: Clustering"
        href: Lab5-Clustering.html
      - text: "Lab 6: LSI"
        href: Lab6-Large-Scale-Inference.html
  right:
    - text: "About"
      href: about.html
    - icon: fab fa-github
      href: https://github.com/statOmics/HDDA
    - text: "statOmics"
      href: http://statomics.github.io/
      
output_dir: "docs"

output:
  bookdown::html_document2:
      code_download: true
      df_print: paged
      theme: flatly
      highlight: tango
      toc: true
      toc_float: true
      number_sections: true
      code_folding: show
      include:
        after_body: footer.html
      css: style.css
new_session: true
exclude: ["renv.lock", "raw-data", "update_install_R.R", "install.R"]