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Cmdstan output files can get pretty large. data.table::fread used in read_cmdstan_csv and read_csv_metadata supports gzip and bzip2 compressed files if the R.utils package is installed.
On the cmdstanr side this would require at least modifying the suffix assertions (assert_file_exists) in both functions. And, switching out grep in favor of zgrep to handle the commented headers with the caveat (at least on linux) that the argument order be switched so that --color=never comes before the regex pattern.
Cmdstan output files can get pretty large.
data.table::fread
used inread_cmdstan_csv
andread_csv_metadata
supports gzip and bzip2 compressed files if the R.utils package is installed.On the
cmdstanr
side this would require at least modifying the suffix assertions (assert_file_exists
) in both functions. And, switching outgrep
in favor ofzgrep
to handle the commented headers with the caveat (at least on linux) that the argument order be switched so that--color=never
comes before the regex pattern.So in
read_cmdstan_csv
:read_metadata_csv
:and similarly for the WSL specific code.
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