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Describe in the documentation of STAR wrapper how to use shared memory #2680

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moxgreen opened this issue Feb 19, 2024 · 2 comments
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@moxgreen
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I know that shared memory can be used in combination with STAR wrapper, as described here #420.
But I no not know how to do that. Unfortunately also the documentation here is not clear for me https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#service-rules-jobs

A toy snakefile example using STAR wrapper and shared memory would be very useful.

Thanks.

@moxgreen moxgreen added the enhancement New feature or request label Feb 19, 2024
@moxgreen moxgreen changed the title Describe in the documentation og STAR wrapper ho to use shared memory Describe in the documentation of STAR wrapper how to use shared memory Feb 19, 2024
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github-actions bot commented Sep 1, 2024

This issue was marked as stale because it has been open for 6 months with no activity.

@github-actions github-actions bot added the Stale label Sep 1, 2024
@fgvieira
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fgvieira commented Sep 5, 2024

@moxgreen did you manage to get the wrapper to work with shared memory? If so, can you make a PR with an example?

@fgvieira fgvieira removed the Stale label Sep 5, 2024
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