Changelog
Features:
- SViper is now a CMake based project
- all functionality of polishing a variant is now outsourced in the include header under the namespace sviper and can also be included as a small header-only library instead of using the app
- SViper can now handle the advanced cigar operations (
=andX) - The thread parameter can be set over the command line
- SViper now outputs a polished VCF with results in the quality and filter fields.
- SViper is now fully parallelized with multiple file handles.
Fixes:
- Negative SV lengths in VCF record are also accepted and parsed correctly
- Some fixes to parsing the cigar string