Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

LDA/PCoA update #47

Open
akshayparopkari opened this issue Jun 7, 2016 · 2 comments
Open

LDA/PCoA update #47

akshayparopkari opened this issue Jun 7, 2016 · 2 comments
Labels
documentation enhancement

Comments

@akshayparopkari
Copy link
Collaborator

akshayparopkari commented Jun 7, 2016 •
edited
Loading

  • LDA
    • Remove --input_data_type parameter.
      • utilize argparse checks for relevant input files for bubble plots.
    • Consolidate figure sizes for LDA and LDA bubble plots.
    • Add optional 3D plotting functionality.
  • PCoA
    • allow users to input distance matrices for PCoA plotting purposes.
    • transfer PCoA computation to PhyloToAST backend.
      • allow users to calculate a variety of beta diversity metrics for downstream analysis.
      • add a parameter which lists out all the available beta diversity metrics which users can use.
@akshayparopkari akshayparopkari mentioned this issue Jul 19, 2016
Merged
9 tasks
@akshayparopkari
Copy link
Collaborator Author

LDA changes fixed in #59

@akshayparopkari akshayparopkari mentioned this issue May 25, 2017
Merged
9 tasks
@akshayparopkari
Copy link
Collaborator Author

Robust 3D LDA visualization capability added in #68

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
documentation enhancement
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@akshayparopkari