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Software development
Serghei Mangul edited this page Jun 26, 2017
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This software was developed by
- Serghei Mangul, [email protected]
- Harry Yang (Taegyun), [email protected]
- Kevin Hsieh, [email protected]
- Linus Chen, [email protected]
Through the process of ROP development, we have got help from various individuals, to whom we are very thankful. Please see the list of people (not exhaustive), who helped with software development.
B.I.G. Summer, 2016
- Jeremy Rotman, [email protected]
- Benjamin Statz, [email protected],
- William Van Der Wey, [email protected]
- Kevin Wesel, [email protected]
Don’t let your unmapped reads go to waste
- Main
- About ROP Tutorial
- What is ROP?
- How ROP works?
- How to prepare unmapped reads
- How to customize tools used by ROP
- Unix Tutorial
- Get started
- Targeted analysis
- ROP analysis: one RNA-Seq sample
- How to run ROP for mouse
- ROP analysis via qsub
- ROP analysis of multiple samples via qsub array
- Immune profiling by ROP (ImReP)
- ImRep across multiple samples
- ROP input details
- ROP output details
- Source of every last read
- Additional options
- How to calculate immune diversity?
- How to run hyper editing pipeline?