diff --git a/tests/repo_correct/portal_objects/metaworkflows/A_gatk-HC-GT.yaml b/tests/repo_correct/portal_objects/metaworkflows/A_gatk-HC-GT.yaml index e6830b2..1fc09d7 100644 --- a/tests/repo_correct/portal_objects/metaworkflows/A_gatk-HC-GT.yaml +++ b/tests/repo_correct/portal_objects/metaworkflows/A_gatk-HC-GT.yaml @@ -84,7 +84,8 @@ workflows: data_type: - Unaligned Reads higlass_file: True - variant_type: SNV + variant_type: + - SNV # gatk-GT config config: ebs_size: 3x diff --git a/tests/test_yaml_file_reference.py b/tests/test_yaml_file_reference.py index 2de420b..95e71c2 100644 --- a/tests/test_yaml_file_reference.py +++ b/tests/test_yaml_file_reference.py @@ -24,7 +24,7 @@ def test_file_reference(): "uuid": "1936f246-22e1-45dc-bb5c-9cfd55537fe7", "data_category": ["Sequencing Reads"], "data_type": ["Unaligned Reads"], - "variant_types": ["SNV"] + "variant_type": ["SNV"] }, { "aliases": ["cgap-core:FileReference-reference_genome_hg38"], diff --git a/tests/test_yaml_metaworkflow.py b/tests/test_yaml_metaworkflow.py index 8125dc2..1d599f3 100644 --- a/tests/test_yaml_metaworkflow.py +++ b/tests/test_yaml_metaworkflow.py @@ -89,7 +89,7 @@ def test_metaworkflow(): "GT_vcf": { "description": "output from gatk-GT", "higlass_file": True, - "variant_type": "SNV", + "variant_type": ["SNV"], "data_category": ["Sequencing Reads"], "data_type": ["Unaligned Reads"] }