setup.py

import io
from os.path import dirname, join
from setuptools import setup


# read the contents of your README file
from os import path

this_directory = path.abspath(path.dirname(__file__))
with open(path.join(this_directory, "README.md"), encoding="utf-8") as f:
    long_description = f.read()


def get_version(relpath):
    """Read version info from a file without importing it"""
    for line in io.open(join(dirname(__file__), relpath), encoding="cp437"):
        if "__version__" in line:
            if '"' in line:
                # __version__ = "0.9"
                return line.split('"')[1]
            elif "'" in line:
                return line.split("'")[1]


setup(
    name="metagenome-atlas",
    version=get_version("atlas/__init__.py"),
    url="https://github.com/metagenome-atlas/atlas",
    license="BSD-3",
    author="Joe Brown, Silas Kieser",
    author_email="brwnjm@gmail.com, silas.kieser@gmail.com",
    description="ATLAS - workflows for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data.",
    long_description=long_description,
    long_description_content_type="text/markdown",
    packages=["atlas"],
    package_data={
        "": [
            "atlas/*",
        ]
    },
    data_files=[(".", ["README.md", "LICENSE.txt"])],
    include_package_data=True,
    install_requires=[],
    # install via conda: click, pandas, pyyaml, snakemake
    entry_points={"console_scripts": ["atlas = atlas.atlas:cli"]},
    classifiers=["Topic :: Scientific/Engineering :: Bio-Informatics"],
)