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environment.yaml
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environment.yaml
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name: tip
channels:
- pytorch
- conda-forge
- defaults
dependencies:
- _ipython_minor_entry_point=8.7.0=h8cf3c4a_0
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_kmp_llvm
- absl-py=1.3.0=pyhd8ed1ab_0
- aiohttp=3.8.3=py39hb9d737c_1
- aiosignal=1.3.1=pyhd8ed1ab_0
- almosthere=2.0.2=h46c0cb4_1
- anyio=3.6.2=pyhd8ed1ab_0
- aom=3.3.0=h27087fc_1
- appdirs=1.4.4=pyh9f0ad1d_0
- argon2-cffi=21.3.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py39hb9d737c_3
- arrow=1.2.3=pyhd8ed1ab_0
- asttokens=2.2.1=pyhd8ed1ab_0
- async-timeout=4.0.2=pyhd8ed1ab_0
- attrs=22.2.0=pyh71513ae_0
- babel=2.11.0=pyhd8ed1ab_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- beautifulsoup4=4.11.1=pyha770c72_0
- bgen=4.1.3=ha0ad84f_0
- bgen-reader=4.0.8=py39hf3d152e_0
- blas=2.106=mkl
- bleach=5.0.1=pyhd8ed1ab_0
- blinker=1.5=pyhd8ed1ab_0
- blosc=1.21.3=hafa529b_0
- bokeh=2.4.3=pyhd8ed1ab_3
- brotli=1.0.9=h166bdaf_8
- brotli-bin=1.0.9=h166bdaf_8
- brotli-python=1.0.9=py39h5a03fae_8
- brotlipy=0.7.0=py39hb9d737c_1005
- brunsli=0.1=h9c3ff4c_0
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- c-blosc2=2.6.1=hf91038e_0
- ca-certificates=2022.12.7=ha878542_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- captum=0.5.0=0
- cbgen=1.0.1=py39hb9d737c_2
- certifi=2022.12.7=pyhd8ed1ab_0
- cffi=1.15.1=py39he91dace_3
- cfitsio=4.1.0=hd9d235c_0
- charls=2.3.4=h9c3ff4c_0
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- click=7.1.2=pyh9f0ad1d_0
- cloudpickle=2.2.0=pyhd8ed1ab_0
- codecarbon=2.1.4=pyh1a96a4e_0
- colorama=0.4.6=pyhd8ed1ab_0
- comm=0.1.2=pyhd8ed1ab_0
- configparser=5.3.0=pyhd8ed1ab_0
- contourpy=1.0.6=py39hf939315_0
- cryptography=39.0.0=py39h079d5ae_0
- cudatoolkit=11.3.1=h2bc3f7f_2
- cycler=0.11.0=pyhd8ed1ab_0
- cytoolz=0.12.0=py39hb9d737c_1
- dash=2.7.1=pyhd8ed1ab_0
- dash-bootstrap-components=1.3.0=pyhd8ed1ab_0
- dash-core-components=2.0.0=pyhd8ed1ab_1
- dash-html-components=2.0.0=pyhd8ed1ab_1
- dash-table=5.0.0=pyhd8ed1ab_1
- dask=2022.12.1=pyhd8ed1ab_0
- dask-core=2022.12.1=pyhd8ed1ab_0
- debugpy=1.6.4=py39h5a03fae_0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- deprecated=1.2.13=pyh6c4a22f_0
- distributed=2022.12.1=pyhd8ed1ab_0
- dnspython=2.3.0=pyhd8ed1ab_0
- docker-pycreds=0.4.0=py_0
- eigen=3.4.0=h4bd325d_0
- entrypoints=0.4=pyhd8ed1ab_0
- exceptiongroup=1.1.0=pyhd8ed1ab_0
- executing=1.2.0=pyhd8ed1ab_0
- expat=2.5.0=h27087fc_0
- ffmpeg=4.3=hf484d3e_0
- fftw=3.3.10=nompi_hf0379b8_106
- fire=0.4.0=pyh44b312d_0
- flask=1.1.2=pyh9f0ad1d_0
- flask-compress=1.13=pyhd8ed1ab_0
- flit-core=3.8.0=pyhd8ed1ab_0
- fonttools=4.38.0=py39hb9d737c_1
- freetype=2.12.1=hca18f0e_1
- frozenlist=1.3.3=py39hb9d737c_0
- fsspec=2022.11.0=pyhd8ed1ab_0
- future=0.18.2=pyhd8ed1ab_6
- fuzzywuzzy=0.18.0=pyhd8ed1ab_0
- giflib=5.2.1=h36c2ea0_2
- gitdb=4.0.10=pyhd8ed1ab_0
- gitpython=3.1.30=pyhd8ed1ab_0
- gmp=6.2.1=h58526e2_0
- gnutls=3.6.13=h85f3911_1
- google-auth-oauthlib=0.4.6=pyhd8ed1ab_0
- grpcio=1.51.1=py39h8c60046_0
- h5py=3.7.0=nompi_py39h817c9c5_102
- hdf5=1.12.2=nompi_h4df4325_101
- heapdict=1.0.1=py_0
- humanize=4.4.0=pyhd8ed1ab_0
- icu=70.1=h27087fc_0
- idna=3.4=pyhd8ed1ab_0
- imagecodecs=2022.2.22=py39hfcd4fa2_6
- imageio=2.23.0=pyhfa7a67d_0
- importlib-metadata=6.0.0=pyha770c72_0
- importlib_resources=5.10.1=pyhd8ed1ab_1
- iniconfig=1.1.1=pyh9f0ad1d_0
- ipykernel=6.19.4=pyh210e3f2_0
- ipython=8.7.0=pyh41d4057_0
- ipython_genutils=0.2.0=py_1
- itsdangerous=2.1.2=pyhd8ed1ab_0
- jedi=0.18.2=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- joblib=1.2.0=pyhd8ed1ab_0
- jpeg=9e=h166bdaf_2
- json5=0.9.5=pyh9f0ad1d_0
- jsonschema=4.17.3=pyhd8ed1ab_0
- jupyter_client=7.4.8=pyhd8ed1ab_0
- jupyter_core=5.1.1=py39hf3d152e_0
- jupyter_server=1.23.4=pyhd8ed1ab_0
- jupyterlab=3.3.2=pyhd8ed1ab_0
- jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
- jupyterlab_server=2.17.0=pyhd8ed1ab_0
- jxrlib=1.1=h7f98852_2
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py39hf939315_1
- krb5=1.20.1=h81ceb04_0
- lame=3.100=h166bdaf_1003
- lcms2=2.14=h6ed2654_0
- ld_impl_linux-64=2.39=hcc3a1bd_1
- lerc=3.0=h9c3ff4c_0
- levenshtein=0.20.9=py39h227be39_0
- libabseil=20220623.0=cxx17_h05df665_6
- libaec=1.0.6=h9c3ff4c_0
- libavif=0.10.1=h166bdaf_0
- libblas=3.9.0=6_mkl
- libbrotlicommon=1.0.9=h166bdaf_8
- libbrotlidec=1.0.9=h166bdaf_8
- libbrotlienc=1.0.9=h166bdaf_8
- libcblas=3.9.0=6_mkl
- libcurl=7.87.0=hdc1c0ab_0
- libdeflate=1.12=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libgrpc=1.51.1=h30feacc_0
- libhwloc=2.8.0=h32351e8_1
- libiconv=1.17=h166bdaf_0
- libitk=5.3.0=hcedbc38_0
- liblapack=3.9.0=6_mkl
- liblapacke=3.9.0=6_mkl
- libllvm11=11.1.0=he0ac6c6_5
- libnghttp2=1.47.0=hff17c54_1
- libnsl=2.0.0=h7f98852_0
- libpng=1.6.39=h753d276_0
- libprotobuf=3.21.12=h3eb15da_0
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.40.0=h753d276_0
- libssh2=1.10.0=hf14f497_3
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.4.0=hc85c160_1
- libuuid=2.32.1=h7f98852_1000
- libuv=1.44.2=h166bdaf_0
- libwebp=1.2.4=h522a892_0
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxml2=2.10.3=h7463322_0
- libzlib=1.2.13=h166bdaf_4
- libzopfli=1.0.3=h9c3ff4c_0
- lime=0.2.0.1=pyh9f0ad1d_0
- llvm-openmp=15.0.6=he0ac6c6_0
- llvmlite=0.39.1=py39h7d9a04d_1
- locket=1.0.0=pyhd8ed1ab_0
- lz4=4.2.0=py39h724f13c_0
- lz4-c=1.9.3=h9c3ff4c_1
- markdown=3.4.1=pyhd8ed1ab_0
- markupsafe=2.1.1=py39hb9d737c_2
- matplotlib-base=3.6.2=py39hf9fd14e_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mistune=2.0.4=pyhd8ed1ab_0
- mkl=2020.4=h726a3e6_304
- monai=1.0.1=pyhd8ed1ab_0
- msgpack-python=1.0.4=py39hf939315_1
- multidict=6.0.4=py39h72bdee0_0
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-common=8.0.32=ha901b37_0
- mysql-connector-python=8.0.31=py39hfa0bd35_2
- mysql-libs=8.0.32=hd7da12d_0
- nbclassic=0.4.8=pyhd8ed1ab_0
- nbclient=0.7.2=pyhd8ed1ab_0
- nbconvert=7.2.7=pyhd8ed1ab_0
- nbconvert-core=7.2.7=pyhd8ed1ab_0
- nbconvert-pandoc=7.2.7=pyhd8ed1ab_0
- nbformat=5.7.1=pyhd8ed1ab_0
- ncurses=6.3=h27087fc_1
- nest-asyncio=1.5.6=pyhd8ed1ab_0
- nettle=3.6=he412f7d_0
- networkx=2.8.6=pyhd8ed1ab_0
- nibabel=3.2.2=pyhd8ed1ab_0
- notebook-shim=0.2.2=pyhd8ed1ab_0
- numba=0.56.4=py39h61ddf18_0
- numpy=1.23.5=py39h3d75532_0
- oauthlib=3.2.2=pyhd8ed1ab_0
- openh264=2.1.1=h780b84a_0
- openjpeg=2.4.0=hb52868f_1
- openssl=3.0.7=h0b41bf4_1
- packaging=22.0=pyhd8ed1ab_0
- pandas=1.5.2=py39h4661b88_0
- pandoc=2.19.2=h32600fe_1
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parso=0.8.3=pyhd8ed1ab_0
- partd=1.3.0=pyhd8ed1ab_0
- pathtools=0.1.2=py_1
- patsy=0.5.3=pyhd8ed1ab_0
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pillow=9.1.1=py39hae2aec6_1
- pip=22.3.1=pyhd8ed1ab_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- platformdirs=2.6.2=pyhd8ed1ab_0
- plotly=5.11.0=pyhd8ed1ab_1
- pluggy=1.0.0=pyhd8ed1ab_5
- pooch=1.6.0=pyhd8ed1ab_0
- prometheus_client=0.15.0=pyhd8ed1ab_0
- promise=2.3=py39hf3d152e_7
- prompt-toolkit=3.0.36=pyha770c72_0
- protobuf=4.21.12=py39h227be39_0
- psutil=5.9.4=py39hb9d737c_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- py-cpuinfo=9.0.0=pyhd8ed1ab_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pycparser=2.21=pyhd8ed1ab_0
- pydeprecate=0.3.2=pyhd8ed1ab_0
- pydicom=2.3.1=pyh1a96a4e_0
- pygments=2.13.0=pyhd8ed1ab_0
- pyjwt=2.6.0=pyhd8ed1ab_0
- pynndescent=0.5.8=pyh1a96a4e_0
- pynvml=11.4.1=pyhd8ed1ab_0
- pyopenssl=23.0.0=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyrsistent=0.19.2=py39hb9d737c_0
- pysocks=1.7.1=pyha2e5f31_6
- pytest=7.2.0=pyhd8ed1ab_2
- python=3.9.15=hba424b6_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.16.2=pyhd8ed1ab_0
- python-levenshtein=0.20.9=pyhd8ed1ab_0
- python_abi=3.9=3_cp39
- pytorch=1.11.0=py3.9_cuda11.3_cudnn8.2.0_0
- pytorch-lightning=1.6.4=pyhd8ed1ab_0
- pytorch-mutex=1.0=cuda
- pytz=2022.7=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pywavelets=1.3.0=py39h2ae25f5_2
- pyyaml=6.0=py39hb9d737c_5
- pyzmq=24.0.1=py39headdf64_1
- rapidfuzz=2.13.7=py39h227be39_0
- re2=2022.06.01=h27087fc_1
- readline=8.1.2=h0f457ee_0
- requests=2.28.1=pyhd8ed1ab_1
- requests-oauthlib=1.3.1=pyhd8ed1ab_0
- rsa=4.9=pyhd8ed1ab_0
- scikit-image=0.19.3=py39h1832856_1
- scikit-learn=1.2.0=py39h86b2a18_0
- scipy=1.8.1=py39h8ba3f38_2
- seaborn=0.11.2=hd8ed1ab_0
- seaborn-base=0.11.2=pyhd8ed1ab_0
- send2trash=1.8.0=pyhd8ed1ab_0
- sentry-sdk=1.12.1=pyhd8ed1ab_0
- setproctitle=1.3.2=py39hb9d737c_1
- setuptools=59.5.0=py39hf3d152e_0
- shortuuid=1.0.11=pyhd8ed1ab_0
- simpleitk=2.2.1=py39hdaa313e_1
- six=1.16.0=pyh6c4a22f_0
- smmap=3.0.5=pyh44b312d_0
- snappy=1.1.9=hbd366e4_2
- sniffio=1.3.0=pyhd8ed1ab_0
- sortedcontainers=2.4.0=pyhd8ed1ab_0
- soupsieve=2.3.2.post1=pyhd8ed1ab_0
- stack_data=0.6.2=pyhd8ed1ab_0
- statsmodels=0.13.5=py39h2ae25f5_2
- tbb=2021.7.0=h924138e_1
- tblib=1.7.0=pyhd8ed1ab_0
- tenacity=8.1.0=pyhd8ed1ab_0
- tensorboard=2.11.0=pyhd8ed1ab_0
- tensorboard-data-server=0.6.1=py39h3ccb8fc_4
- tensorboard-plugin-wit=1.8.1=pyhd8ed1ab_0
- termcolor=2.1.1=pyhd8ed1ab_0
- terminado=0.17.1=pyh41d4057_0
- texttable=1.6.7=pyhd8ed1ab_0
- threadpoolctl=3.1.0=pyh8a188c0_0
- tifffile=2022.10.10=pyhd8ed1ab_0
- tinycss2=1.2.1=pyhd8ed1ab_0
- tk=8.6.12=h27826a3_0
- tomli=2.0.1=pyhd8ed1ab_0
- toolz=0.12.0=pyhd8ed1ab_0
- torchaudio=0.11.0=py39_cu113
- torchio=0.18.86=pyhd8ed1ab_0
- torchmetrics=0.11.0=pyhd8ed1ab_0
- torchvision=0.12.0=py39_cu113
- tornado=6.2=py39hb9d737c_1
- tqdm=4.64.1=pyhd8ed1ab_0
- traitlets=5.8.0=pyhd8ed1ab_0
- typing-extensions=4.4.0=hd8ed1ab_0
- typing_extensions=4.4.0=pyha770c72_0
- tzdata=2022g=h191b570_0
- umap-learn=0.5.3=py39hf3d152e_0
- unicodedata2=15.0.0=py39hb9d737c_0
- urllib3=1.26.13=pyhd8ed1ab_0
- wandb=0.12.11=pyhd8ed1ab_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py_1
- websocket-client=1.4.2=pyhd8ed1ab_0
- werkzeug=2.2.2=pyhd8ed1ab_0
- wheel=0.38.4=pyhd8ed1ab_0
- wrapt=1.14.1=py39hb9d737c_1
- xarray=2022.12.0=pyhd8ed1ab_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- yarl=1.8.2=py39hb9d737c_0
- yaspin=2.2.0=pyhd8ed1ab_0
- zeromq=4.3.4=h9c3ff4c_1
- zfp=0.5.5=h9c3ff4c_8
- zict=2.2.0=pyhd8ed1ab_0
- zipp=3.11.0=pyhd8ed1ab_0
- zlib=1.2.13=h166bdaf_4
- zlib-ng=2.0.6=h166bdaf_0
- zstd=1.5.2=h6239696_4
- pip:
- antlr4-python3-runtime==4.9.3
- cachetools==4.2.4
- carbontracker==1.1.6
- geocoder==1.38.1
- google-auth==1.35.0
- hydra-core==1.2.0
- icd10-cm==0.0.5
- liac-arff==2.5.0
- lightly==1.2.22
- lightly-utils==0.0.2
- lightning-bolts==0.5.0
- matplotlib-venn==0.11.7
- minio==7.1.9
- omegaconf==2.2.2
- opencv-python==4.6.0.66
- openml==0.12.2
- pyarrow==8.0.0
- ratelim==0.1.6
- simple-icd-10==2.0.1
- tabpfn==0.1.8
- torch-tb-profiler==0.4.0
- xgboost==1.7.4
- xmltodict==0.13.0
- albumentations==1.3.1
- einops==0.7.0
- timm==0.9.12
# - hyperimpute==0.1.17