From eb817631fbb6f908629fa88e65cdce07d0740cfc Mon Sep 17 00:00:00 2001
From: Sergio Oller <sergioller@gmail.com>
Date: Tue, 30 Apr 2024 04:17:45 +0000
Subject: [PATCH] Fix missing documentation warning

---
 R/align-GCIMSSample.R                 | 4 ++++
 man/alignRt_pow-GCIMSSample-method.Rd | 8 ++++++++
 2 files changed, 12 insertions(+)

diff --git a/R/align-GCIMSSample.R b/R/align-GCIMSSample.R
index a2e091f..6e34b8c 100644
--- a/R/align-GCIMSSample.R
+++ b/R/align-GCIMSSample.R
@@ -141,6 +141,10 @@ methods::setMethod(
 #' @param x A [GCIMSSample] object
 #' @param ric_ref The reference Reverse Ion Chromatogram
 #' @param ric_ref_rt The retention times corresponding to `ric_ref`
+#' @param lambdas a vector with the penalties to test the POW
+#' @param p By default `10`, meaning to use one every `10` points to validate.
+#' @param max_it Maximum number of iterations
+#' @param lambda1 Regularization parameter for second derivative of warp
 #' @return The modified [GCIMSSample]
 #' @export
 methods::setMethod(
diff --git a/man/alignRt_pow-GCIMSSample-method.Rd b/man/alignRt_pow-GCIMSSample-method.Rd
index 9990c77..49307d5 100644
--- a/man/alignRt_pow-GCIMSSample-method.Rd
+++ b/man/alignRt_pow-GCIMSSample-method.Rd
@@ -20,6 +20,14 @@
 \item{ric_ref}{The reference Reverse Ion Chromatogram}
 
 \item{ric_ref_rt}{The retention times corresponding to \code{ric_ref}}
+
+\item{lambdas}{a vector with the penalties to test the POW}
+
+\item{p}{By default \code{10}, meaning to use one every \code{10} points to validate.}
+
+\item{max_it}{Maximum number of iterations}
+
+\item{lambda1}{Regularization parameter for second derivative of warp}
 }
 \value{
 The modified \link{GCIMSSample}