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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method("[",nmr_dataset)
S3method("[",nmr_dataset_1D)
S3method("[",nmr_dataset_peak_table)
S3method("names<-",nmr_dataset_family)
S3method("nmr_data<-",nmr_dataset_1D)
S3method(.DollarNames,nmr_dataset_family)
S3method(as.data.frame,nmr_dataset_peak_table)
S3method(filter,nmr_dataset_family)
S3method(format,nmr_dataset)
S3method(format,nmr_dataset_1D)
S3method(format,nmr_dataset_peak_table)
S3method(names,nmr_dataset_family)
S3method(nmr_data,nmr_dataset_1D)
S3method(nmr_data,nmr_dataset_peak_table)
S3method(nmr_exclude_region,nmr_dataset_1D)
S3method(nmr_integrate_regions,nmr_dataset_1D)
S3method(nmr_interpolate_1D,nmr_dataset)
S3method(nmr_pca_build_model,nmr_dataset_1D)
S3method(nmr_ppm_resolution,nmr_dataset)
S3method(nmr_ppm_resolution,nmr_dataset_1D)
S3method(plot,nmr_dataset_1D)
S3method(print,nmr_dataset)
S3method(print,nmr_dataset_1D)
S3method(print,nmr_dataset_peak_table)
S3method(rename,nmr_dataset_family)
S3method(tidy,nmr_dataset_1D)
export("%>%")
export("nmr_data<-")
export(.DollarNames)
export(SummarizedExperiment_to_nmr_data_1r)
export(SummarizedExperiment_to_nmr_dataset_peak_table)
export(bp_VIP_analysis)
export(bp_kfold_VIP_analysis)
export(download_MTBLS242)
export(file_lister)
export(files_to_rDolphin)
export(filter)
export(get_integration_with_metadata)
export(is.nmr_dataset)
export(is.nmr_dataset_1D)
export(is.nmr_dataset_peak_table)
export(models_stability_plot_bootstrap)
export(models_stability_plot_plsda)
export(new_nmr_data_analysis_method)
export(new_nmr_dataset)
export(new_nmr_dataset_1D)
export(new_nmr_dataset_peak_table)
export(nmr_align)
export(nmr_align_find_ref)
export(nmr_autophase)
export(nmr_baseline_estimation)
export(nmr_baseline_removal)
export(nmr_baseline_threshold)
export(nmr_baseline_threshold_plot)
export(nmr_batman_export_dataset)
export(nmr_batman_metabolites_list)
export(nmr_batman_multi_data_user)
export(nmr_batman_multi_data_user_hmdb)
export(nmr_batman_options)
export(nmr_batman_write_options)
export(nmr_build_peak_table)
export(nmr_data)
export(nmr_data_1r_to_SummarizedExperiment)
export(nmr_data_analysis)
export(nmr_dataset_load)
export(nmr_dataset_peak_table_to_SummarizedExperiment)
export(nmr_dataset_save)
export(nmr_detect_peaks)
export(nmr_detect_peaks_plot)
export(nmr_detect_peaks_plot_overview)
export(nmr_detect_peaks_plot_peaks)
export(nmr_detect_peaks_tune_snr)
export(nmr_exclude_region)
export(nmr_export_data_1r)
export(nmr_get_peak_distances)
export(nmr_identify_regions_blood)
export(nmr_identify_regions_cell)
export(nmr_identify_regions_urine)
export(nmr_integrate_peak_positions)
export(nmr_integrate_regions)
export(nmr_interpolate_1D)
export(nmr_meta_add)
export(nmr_meta_add_tidy_excel)
export(nmr_meta_export)
export(nmr_meta_get)
export(nmr_meta_get_column)
export(nmr_meta_groups)
export(nmr_normalize)
export(nmr_normalize_extra_info)
export(nmr_pca_build_model)
export(nmr_pca_loadingplot)
export(nmr_pca_outliers)
export(nmr_pca_outliers_filter)
export(nmr_pca_outliers_plot)
export(nmr_pca_outliers_robust)
export(nmr_pca_plot_variance)
export(nmr_pca_scoreplot)
export(nmr_peak_clustering)
export(nmr_peak_clustering_plot)
export(nmr_ppm_resolution)
export(nmr_read_bruker_fid)
export(nmr_read_samples)
export(nmr_read_samples_dir)
export(nmr_zip_bruker_samples)
export(peaklist_accept_peaks)
export(peaklist_fit_lorentzians)
export(permutation_test_model)
export(permutation_test_plot)
export(pipe_add_metadata)
export(pipe_exclude_regions)
export(pipe_filter_samples)
export(pipe_interpolate_1D)
export(pipe_load_samples)
export(pipe_normalization)
export(pipe_outlier_detection)
export(pipe_peak_integration)
export(pipe_peakdet_align)
export(plot_bootstrap_multimodel)
export(plot_interactive)
export(plot_plsda_multimodel)
export(plot_plsda_samples)
export(plot_vip_scores)
export(plot_webgl)
export(plsda_auroc_vip_compare)
export(plsda_auroc_vip_method)
export(ppm_resolution)
export(random_subsampling)
export(rename)
export(save_files_to_rDolphin)
export(save_profiling_output)
export(tidy)
export(to_ASICS)
export(to_ChemoSpec)
export(validate_nmr_dataset)
export(validate_nmr_dataset_1D)
export(validate_nmr_dataset_family)
export(validate_nmr_dataset_peak_table)
importFrom(dplyr,filter)
importFrom(dplyr,rename)
importFrom(generics,tidy)
importFrom(glue,glue)
importFrom(glue,glue_collapse)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(graphics,axis)
importFrom(graphics,hist)
importFrom(graphics,lines)
importFrom(graphics,plot)
importFrom(graphics,text)
importFrom(magrittr,"%>%")
importFrom(mixOmics,mixOmics)
importFrom(rlang,.data)
importFrom(stats,ecdf)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,predict)
importFrom(stats,pt)
importFrom(stats,qt)
importFrom(stats,sd)
importFrom(stats,wilcox.test)
importFrom(utils,.DollarNames)