MANIFEST.in

include *.rst
include LICENSE
include README.md
include pyproject.toml
include setup.py
include .coveragerc
include .flake8
include .dockerignore
include .gitignore
include .nojekyll
include .pre-commit-config.yaml
include CHANGELOG.MD
include CITATION.cff
include dockerfile
include logo.png
include mkdocs.yml
include mkgendocs.yml
include pdm.lock
include pylintrc
include pytest.ini

recursive-include scikit_longitudinal *.py *.c *.cpp *.h *.pyx *.pxd *.pxi *.tp
recursive-include docs *

# Exclude unnecessary directories and files
recursive-exlude scikit_longitudinal/tests *
recursive-exclude .cache *
recursive-exclude .github *
recursive-exclude __pypackages__ *
recursive-exclude dist *
recursive-exclude .pdm-build *
recursive-exclude .pytest_cache *
recursive-exclude .run *
recursive-exclude .venv *
recursive-exclude htmlcov *
recursive-exclude .coverage *
recursive-exclude .coverage.* *
recursive-exclude workflows *
exclude .unit-test-ci.yml
exclude documentation-deploy.yml
exclude publish-pypi.yml