diff --git a/conda/env/lock/pcgr-linux-64.lock b/conda/env/lock/pcgr-linux-64.lock
index 7a942498..0bf787f1 100644
--- a/conda/env/lock/pcgr-linux-64.lock
+++ b/conda/env/lock/pcgr-linux-64.lock
@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: d60bbe4a2b9daa8496dcce4360f6c460ce256eb218449fdb5d1f6ce152709497
+# input_hash: 90491074670f18655d56ccc75c5b126894ff213d69129af2a1e10a7a9a16917d
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
 https://conda.anaconda.org/bioconda/linux-64/blast-legacy-2.2.26-h9ee0642_4.tar.bz2#d35a85be775b5181e48cc3a5510cd6f3
@@ -8,9 +8,9 @@ https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.8.30-hbcca0
 https://conda.anaconda.org/conda-forge/noarch/kernel-headers_linux-64-3.10.0-he073ed8_17.conda#285931bd28b3b8f176d46dd9fd627a09
 https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.39-hcc3a1bd_1.conda#737be0d34c22d24432049ab7a3214de4
 https://conda.anaconda.org/conda-forge/linux-64/libgcc-devel_linux-64-10.4.0-hd38fd1e_19.tar.bz2#b41d6540a78ba2518655eebcb0e41e20
-https://conda.anaconda.org/conda-forge/linux-64/pandoc-3.4-ha770c72_0.conda#61c94057aaa5ae6145137ce1fddb2c04
+https://conda.anaconda.org/conda-forge/linux-64/pandoc-3.5-ha770c72_0.conda#2889e6b9c666c3a564ab90cedc5832fd
 https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.12-5_cp312.conda#0424ae29b104430108f5218a66db7260
-https://conda.anaconda.org/conda-forge/noarch/tzdata-2024a-h8827d51_1.conda#8bfdead4e0fff0383ae4c9c50d0531bd
+https://conda.anaconda.org/conda-forge/noarch/tzdata-2024b-hc8b5060_0.conda#8ac3367aafb1cc0a068483c580af8015
 https://conda.anaconda.org/bioconda/linux-64/vcfanno-0.3.5-h9ee0642_1.tar.bz2#8a4602d50382770bdc2d789c3fbd1862
 https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.1.0-h77fa898_1.conda#23c255b008c4f2ae008f81edcabaca89
 https://conda.anaconda.org/conda-forge/noarch/sysroot_linux-64-2.17-h4a8ded7_17.conda#f58cb23983633068700a756f0b5f165a
@@ -18,6 +18,7 @@ https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#
 https://conda.anaconda.org/conda-forge/linux-64/binutils_impl_linux-64-2.39-he00db2b_1.conda#3d726e8b51a1f5bfd66892a2b7d9db2d
 https://conda.anaconda.org/conda-forge/linux-64/binutils_linux-64-2.39-h5fc0e48_13.conda#7f25a524665e4e2f8a5f86522f8d0e31
 https://conda.anaconda.org/conda-forge/linux-64/libgcc-14.1.0-h77fa898_1.conda#002ef4463dd1e2b44a94a4ace468f5d2
+https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.1-heb4867d_0.conda#db792eada25e970c46642f624b029fd7
 https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.6.3-h5888daf_0.conda#59f4c43bb1b5ef1c71946ff2cbf59524
 https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.1.0-h69a702a_1.conda#1efc0ad219877a73ef977af7dbb51f17
 https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-14.1.0-hc5f4f2c_1.conda#10a0cef64b784d6ab6da50ebca4e984d
@@ -25,7 +26,6 @@ https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-14.1.0-hc0a3c3a_1.cond
 https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.2-hb9d3cd8_0.conda#4d638782050ab6faa27275bed57e9b4e
 https://conda.anaconda.org/conda-forge/linux-64/argtable2-2.13-hd590300_1004.conda#d7d089e975b1213c2a0f94e592b7b422
 https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h4bc722e_7.conda#62ee74e96c5ebb0af99386de58cf9553
-https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.33.1-heb4867d_0.conda#0d3c60291342c0c025db231353376dfb
 https://conda.anaconda.org/conda-forge/linux-64/expat-2.6.3-h5888daf_0.conda#6595440079bed734b113de44ffd3cd0a
 https://conda.anaconda.org/conda-forge/linux-64/gettext-tools-0.22.5-he02047a_3.conda#fcd2016d1d299f654f81021e27496818
 https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2#30186d27e2c9fa62b45fb1476b7200e3
@@ -187,7 +187,7 @@ https://conda.anaconda.org/bioconda/linux-64/pysam-0.22.1-py312hcfdcdd7_2.tar.bz
 https://conda.anaconda.org/conda-forge/noarch/python-dateutil-2.9.0-pyhd8ed1ab_0.conda#2cf4264fffb9e6eff6031c5b6884d61c
 https://conda.anaconda.org/conda-forge/linux-64/gsl-2.7-he838d99_0.tar.bz2#fec079ba39c9cca093bf4c00001825de
 https://conda.anaconda.org/conda-forge/linux-64/mysql-8.3.0-h27aab58_4.conda#876fca579d3aa248729bd7a2d38ae428
-https://conda.anaconda.org/conda-forge/linux-64/numpy-2.1.1-py312h58c1407_0.conda#839596d1c1c41f6fc01042e12cb7500c
+https://conda.anaconda.org/conda-forge/linux-64/numpy-2.1.2-py312h58c1407_0.conda#b7e9a46277a1ee0afc6311e7760df0c3
 https://conda.anaconda.org/bioconda/noarch/perl-archive-tar-2.40-pl5321hdfd78af_0.tar.bz2#ef5f007762b5ad9425694104d7db4463
 https://conda.anaconda.org/bioconda/noarch/perl-bioperl-run-1.007003-pl5321hdfd78af_0.tar.bz2#5b7b092efda407c9af1981426d83f3f5
 https://conda.anaconda.org/bioconda/noarch/perl-business-isbn-3.007-pl5321hdfd78af_0.tar.bz2#3cdaa3f73497365e08346443d81dac81
@@ -212,7 +212,7 @@ https://conda.anaconda.org/conda-forge/linux-64/scipy-1.14.1-py312h7d485d2_0.con
 https://conda.anaconda.org/bioconda/noarch/vcf2maf-umccr-1.6.21.20230511-hdfd78af_0.tar.bz2#ec3a03df0bce17c35b2a2d1436c718ea
 https://conda.anaconda.org/bioconda/linux-64/viennarna-2.6.4-py312pl5321h9f0f9fd_3.tar.bz2#1b43d20dbe0a4dbc6d8d958bce7bc37b
 https://conda.anaconda.org/bioconda/linux-64/blast-2.16.0-hc155240_2.tar.bz2#7870230d4cc0a7647eb90b6e2ebd977f
-https://conda.anaconda.org/pcgr/noarch/pcgr-2.1.0-py_0.tar.bz2#40cbe65f0de9377c72c7b1064b2d3011
+https://conda.anaconda.org/pcgr/noarch/pcgr-2.1.1-py_0.tar.bz2#232dd7f2b511fa433635dea16ce8c3e8
 https://conda.anaconda.org/bioconda/noarch/perl-http-message-6.36-pl5321hdfd78af_0.tar.bz2#a213d1308ffa8e0789996ae6ecda98ae
 https://conda.anaconda.org/bioconda/noarch/perl-net-http-6.22-pl5321hdfd78af_0.tar.bz2#f3b44f2b9932c3def346e6ad9aabe43d
 https://conda.anaconda.org/bioconda/noarch/perl-www-robotrules-6.02-pl5321hdfd78af_4.tar.bz2#8305f4ed6306b1125a8c8caf2f05aec8
diff --git a/conda/env/lock/pcgr-osx-64.lock b/conda/env/lock/pcgr-osx-64.lock
index f19ea622..42174430 100644
--- a/conda/env/lock/pcgr-osx-64.lock
+++ b/conda/env/lock/pcgr-osx-64.lock
@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: osx-64
-# input_hash: 152e1fdd95dfd296288b49e493ad40007269bae8916b945b21e8f12148595af5
+# input_hash: 3416ed34c11552e946dbbb1337b45198d8385bf75ba3c05cd7af18f581bf4131
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/osx-64/argtable2-2.13-h10d778d_1004.conda#7ebcbc431363dfbf9ae25e6a7205d414
 https://conda.anaconda.org/conda-forge/osx-64/ca-certificates-2024.8.30-h8857fd0_0.conda#b7e5424e7f06547a903d28e4651dbb21
@@ -11,21 +11,21 @@ https://conda.anaconda.org/conda-forge/osx-64/libiconv-1.17-hd75f5a5_2.conda#6c3
 https://conda.anaconda.org/conda-forge/osx-64/libntlm-1.4-h0d85af4_1002.tar.bz2#d9c13a9ec123f376ac38db038b7dfbb6
 https://conda.anaconda.org/conda-forge/osx-64/libunistring-0.9.10-h0d85af4_0.tar.bz2#40f27dc16f73256d7b93e53c4f03d92f
 https://conda.anaconda.org/bioconda/osx-64/paml-4.10.7-h2413b67_1.tar.bz2#3b63064a2150fc52a2e29dc9dd819b16
-https://conda.anaconda.org/conda-forge/osx-64/pandoc-3.4-h694c41f_0.conda#63ec245f3d3169cbef0bc2d492d33dde
+https://conda.anaconda.org/conda-forge/osx-64/pandoc-3.5-h694c41f_0.conda#4c2700fd13f9dbd7929d20eedde984ee
 https://conda.anaconda.org/conda-forge/osx-64/perl-5.32.1-7_h10d778d_perl5.conda#dc442e0885c3a6b65e61c61558161a9e
 https://conda.anaconda.org/conda-forge/osx-64/python_abi-3.10-5_cp310.conda#5918a11cbc8e1650b2dde23b6ef7452c
-https://conda.anaconda.org/conda-forge/noarch/tzdata-2024a-h8827d51_1.conda#8bfdead4e0fff0383ae4c9c50d0531bd
+https://conda.anaconda.org/conda-forge/noarch/tzdata-2024b-hc8b5060_0.conda#8ac3367aafb1cc0a068483c580af8015
 https://conda.anaconda.org/conda-forge/osx-64/unzip-6.0-h0d85af4_3.tar.bz2#e4bc5df44c5bb4892929b02596dc68c9
 https://conda.anaconda.org/bioconda/osx-64/vcfanno-0.3.5-h527b516_1.tar.bz2#d0621866e457d007f02b28d781b50395
 https://conda.anaconda.org/conda-forge/osx-64/xz-5.2.6-h775f41a_0.tar.bz2#a72f9d4ea13d55d745ff1ed594747f10
 https://conda.anaconda.org/conda-forge/osx-64/yaml-0.2.5-h0d85af4_2.tar.bz2#d7e08fcf8259d742156188e8762b4d20
 https://conda.anaconda.org/conda-forge/osx-64/bzip2-1.0.8-hfdf4475_7.conda#7ed4301d437b59045be7e051a0308211
-https://conda.anaconda.org/conda-forge/osx-64/c-ares-1.33.1-h44e7173_0.conda#b31a2de5edfddb308dda802eab2956dc
-https://conda.anaconda.org/conda-forge/osx-64/libcxx-19.1.0-hf95d169_0.conda#0ed117b4cbbf7917dd47b4390e511d2a
+https://conda.anaconda.org/conda-forge/osx-64/c-ares-1.34.1-h44e7173_0.conda#611618b0b3949f947da65c96ff9c51fb
+https://conda.anaconda.org/conda-forge/osx-64/libcxx-19.1.1-hf95d169_0.conda#2b09d0f92cae6df4b1670adcaca9c38c
 https://conda.anaconda.org/conda-forge/osx-64/libexpat-2.6.3-hac325c4_0.conda#c1db99b0a94a2f23bd6ce39e2d314e07
 https://conda.anaconda.org/conda-forge/osx-64/libintl-0.22.5-hdfe23c8_3.conda#52d4d643ed26c07599736326c46bf12f
 https://conda.anaconda.org/conda-forge/osx-64/libzlib-1.2.13-h87427d6_6.conda#c0ef3c38a80c02ae1d86588c055184fc
-https://conda.anaconda.org/conda-forge/osx-64/llvm-openmp-18.1.8-h15ab845_1.conda#ad0afa524866cc1c08b436865d0ae484
+https://conda.anaconda.org/conda-forge/osx-64/llvm-openmp-19.1.1-h545e0da_0.conda#3f3e4a599dd2638a945fc5821090db07
 https://conda.anaconda.org/conda-forge/osx-64/macports-legacy-support-1.3.0-hfdf4475_0.conda#08f41941a3154f2ed18f61e4a4cb8776
 https://conda.anaconda.org/conda-forge/osx-64/ncurses-6.5-hf036a51_1.conda#e102bbf8a6ceeaf429deab8032fc8977
 https://conda.anaconda.org/conda-forge/osx-64/openssl-1.1.1w-h8a1eda9_0.conda#83cdb687c0caa41dad9d4941afcdfd64
@@ -212,7 +212,7 @@ https://conda.anaconda.org/bioconda/noarch/perl-libwww-perl-6.67-pl5321hdfd78af_
 https://conda.anaconda.org/bioconda/osx-64/pybedtools-0.10.0-py310h0b3aad1_2.tar.bz2#2674eda3d1eb4d1445dfcc11ae51b28b
 https://conda.anaconda.org/conda-forge/osx-64/scipy-1.14.1-py310h59907b9_0.conda#77c1165640a83f50b4cfefaf8fa64801
 https://conda.anaconda.org/conda-forge/osx-64/compiler-rt-12.0.1-he01351e_0.tar.bz2#aa2cb3794dae4a09f19c3b7169b5df1f
-https://conda.anaconda.org/pcgr/noarch/pcgr-2.1.0-py_0.tar.bz2#40cbe65f0de9377c72c7b1064b2d3011
+https://conda.anaconda.org/pcgr/noarch/pcgr-2.1.1-py_0.tar.bz2#232dd7f2b511fa433635dea16ce8c3e8
 https://conda.anaconda.org/bioconda/noarch/perl-xml-dom-1.46-pl5321hdfd78af_1.tar.bz2#45b7ce435727456727f45b3e2121b23b
 https://conda.anaconda.org/bioconda/osx-64/t-coffee-12.00.7fb08c2-h26a2512_0.tar.bz2#fe6f3532da0e9d3868b58ecd07f33744
 https://conda.anaconda.org/bioconda/noarch/vcf2tsvpy-0.6.1-pyhda70652_0.tar.bz2#cb9612a58cefb7e2a144c759027c0a94
diff --git a/conda/env/lock/pcgrr-linux-64.lock b/conda/env/lock/pcgrr-linux-64.lock
index 521e13af..2f54e824 100644
--- a/conda/env/lock/pcgrr-linux-64.lock
+++ b/conda/env/lock/pcgrr-linux-64.lock
@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: 9ac2a515823dc616a1591efb0c879c8975816b7a670cdfaa46a6544233b76584
+# input_hash: ef820f14908b95738a90a72c6d0815c96fcc2278122805579f5c1b8580c9020e
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
 https://conda.anaconda.org/conda-forge/noarch/_r-mutex-1.0.1-anacondar_1.tar.bz2#19f9db5f4f1b7f5ef5f6d67207f25f38
@@ -13,8 +13,8 @@ https://conda.anaconda.org/conda-forge/noarch/font-ttf-source-code-pro-2.038-h77
 https://conda.anaconda.org/conda-forge/noarch/font-ttf-ubuntu-0.83-h77eed37_3.conda#49023d73832ef61042f6a237cb2687e7
 https://conda.anaconda.org/conda-forge/noarch/kernel-headers_linux-64-3.10.0-he073ed8_17.conda#285931bd28b3b8f176d46dd9fd627a09
 https://conda.anaconda.org/conda-forge/linux-64/pandoc-3.2-ha770c72_0.conda#8c924f0b7f3e064b1c954a08e7c32fba
-https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.12-5_cp312.conda#0424ae29b104430108f5218a66db7260
-https://conda.anaconda.org/conda-forge/noarch/tzdata-2024a-h8827d51_1.conda#8bfdead4e0fff0383ae4c9c50d0531bd
+https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.13-5_cp313.conda#381bbd2a92c863f640a55b6ff3c35161
+https://conda.anaconda.org/conda-forge/noarch/tzdata-2024b-hc8b5060_0.conda#8ac3367aafb1cc0a068483c580af8015
 https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-0.tar.bz2#f766549260d6815b0c52253f1fb1bb29
 https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.43-h712a8e2_1.conda#83e1364586ceb8d0739fbc85b5c95837
 https://conda.anaconda.org/conda-forge/noarch/libgcc-devel_linux-64-14.1.0-h5d3d1c9_101.conda#713834677de996ac1bc1b0b305ba46ba
@@ -25,47 +25,51 @@ https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#
 https://conda.anaconda.org/conda-forge/linux-64/binutils_impl_linux-64-2.43-h4bf12b8_1.conda#5f354010f194e85dc681dec92405ef9e
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 https://conda.anaconda.org/conda-forge/linux-64/libgcc-14.1.0-h77fa898_1.conda#002ef4463dd1e2b44a94a4ace468f5d2
+https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.1-heb4867d_0.conda#db792eada25e970c46642f624b029fd7
 https://conda.anaconda.org/bioconda/linux-64/jq-1.5-0.tar.bz2#f380e0813e0752164752d9a9c63667d7
+https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.22-hb9d3cd8_0.conda#b422943d5d772b7cc858b36ad2a92db5
 https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.6.3-h5888daf_0.conda#59f4c43bb1b5ef1c71946ff2cbf59524
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 https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-14.1.0-hc0a3c3a_1.conda#9dbb9699ea467983ba8a4ba89b08b066
-https://conda.anaconda.org/conda-forge/linux-64/libuv-1.49.0-hb9d3cd8_0.conda#925a0022e1fa4f888ceed96a309a5baf
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+https://conda.anaconda.org/conda-forge/linux-64/libuv-1.49.1-hb9d3cd8_0.conda#52849ca4b3be33ac3f01c77da737e068
+https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-hb9d3cd8_2.conda#edb0dca6bc32e4f4789199455a1dbeb8
+https://conda.anaconda.org/conda-forge/linux-64/make-4.4.1-hb9d3cd8_2.conda#33405d2a66b1411db9f7242c8b97c9e7
 https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.2-hb9d3cd8_0.conda#4d638782050ab6faa27275bed57e9b4e
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-https://conda.anaconda.org/conda-forge/linux-64/xorg-kbproto-1.0.7-hb9d3cd8_1003.conda#e87bfacb110d85e1eb6099c9ed8e7236
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 https://conda.anaconda.org/conda-forge/linux-64/r-fansi-1.0.6-r43hb1dbf0f_1.conda#4c17a0f74a974316fdfafa5a9fe91b52
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@@ -150,7 +147,7 @@ https://conda.anaconda.org/conda-forge/noarch/r-formatr-1.14-r43hc72bb7e_2.conda
 https://conda.anaconda.org/conda-forge/linux-64/r-fs-1.6.4-r43ha18555a_1.conda#a6ea7a4871b7129f41c7ab8940792107
 https://conda.anaconda.org/conda-forge/noarch/r-futile.options-1.0.1-r43hc72bb7e_1005.conda#57962626cdffa616861bb383076195a2
 https://conda.anaconda.org/conda-forge/noarch/r-generics-0.1.3-r43hc72bb7e_3.conda#2d352e143ff3536b257fe53e4ba91a00
-https://conda.anaconda.org/conda-forge/linux-64/r-glue-1.7.0-r43hb1dbf0f_1.conda#94cbb45d60c60af1fbcf0cf20ad0baa6
+https://conda.anaconda.org/conda-forge/linux-64/r-glue-1.8.0-r43h2b5f3a1_0.conda#381d612db7519f2a54f1b187e738ac7b
 https://conda.anaconda.org/conda-forge/linux-64/r-gower-1.0.1-r43hb1dbf0f_2.conda#f61cbf09c3e0434de7d8125d576c9642
 https://conda.anaconda.org/conda-forge/noarch/r-gridbase-0.4_7-r43hc72bb7e_1006.conda#cb20b20001ea951cb8fbb86ed14bd061
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@@ -183,7 +180,7 @@ https://conda.anaconda.org/conda-forge/linux-64/r-rappdirs-0.3.3-r43hb1dbf0f_3.c
 https://conda.anaconda.org/conda-forge/noarch/r-rcolorbrewer-1.1_3-r43h785f33e_3.conda#ceb1c167b7d9e5eefed0ecbe759540de
 https://conda.anaconda.org/conda-forge/linux-64/r-rcpp-1.0.13-r43h0d4f4ea_0.conda#4bdf774ca022b130631769de75f2e3b7
 https://conda.anaconda.org/conda-forge/noarch/r-registry-0.5_1-r43hc72bb7e_5.conda#f50f3b41b4a36021e3e4b9f31ea1ac18
-https://conda.anaconda.org/conda-forge/noarch/r-renv-1.0.9-r43hc72bb7e_0.conda#9664b714e9c004dafd8494f488b1bfb2
+https://conda.anaconda.org/conda-forge/noarch/r-renv-1.0.10-r43hc72bb7e_0.conda#8a34049b2345d25c16e965d09dbe1391
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@@ -194,12 +191,12 @@ https://conda.anaconda.org/conda-forge/noarch/r-snow-0.4_4-r43hc72bb7e_3.conda#6
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+https://conda.anaconda.org/conda-forge/linux-64/r-sys-3.4.3-r43h2b5f3a1_0.conda#b7ce9f99da446a47b97950ff9a9cbb60
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 https://conda.anaconda.org/conda-forge/noarch/r-withr-3.0.1-r43hc72bb7e_0.conda#7d7e5e3740a49c0fe78ff729d49ea1a5
-https://conda.anaconda.org/conda-forge/linux-64/r-xfun-0.47-r43h0d4f4ea_0.conda#aaafd7a2aea6c82ee657590e1cfe91d6
+https://conda.anaconda.org/conda-forge/linux-64/r-xfun-0.48-r43h93ab643_0.conda#e8307c1329f2bb16806ad65def92ecd9
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@@ -210,7 +207,7 @@ https://conda.anaconda.org/bioconda/noarch/bioconductor-matrixgenerics-1.14.0-r4
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 https://conda.anaconda.org/bioconda/linux-64/bioconductor-s4vectors-0.40.2-r43ha9d7317_2.tar.bz2#6aa465e83dabb7ed5b853519d8a334e4
 https://conda.anaconda.org/conda-forge/noarch/r-argparse-2.2.3-r43hc72bb7e_1.conda#4a112f5abf0991d2f72d0efc7abbfc04
-https://conda.anaconda.org/conda-forge/linux-64/r-askpass-1.2.0-r43hb1dbf0f_1.conda#01e6c23b754802bb1f68664e56de58fc
+https://conda.anaconda.org/conda-forge/linux-64/r-askpass-1.2.1-r43h2b5f3a1_0.conda#8ccad521ab24a75928dd54af1e42632d
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@@ -288,7 +285,7 @@ https://conda.anaconda.org/conda-forge/noarch/r-lava-1.8.0-r43hc72bb7e_0.conda#5
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-https://conda.anaconda.org/conda-forge/linux-64/r-rsqlite-2.3.7-r43h0d4f4ea_0.conda#7f09465a2f9b2b4fa020616398e0d441
+https://conda.anaconda.org/conda-forge/linux-64/r-rsqlite-2.3.7-r43h93ab643_1.conda#68f5810c3d21bf1d16d5218d4dc6c3fa
 https://conda.anaconda.org/conda-forge/linux-64/r-tibble-3.2.1-r43hdb488b9_3.conda#3e78c6ee2205ef56c165cbf2c166fdf6
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@@ -329,5 +326,5 @@ https://conda.anaconda.org/bioconda/noarch/bioconductor-bsgenome.hsapiens.ucsc.h
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 https://conda.anaconda.org/bioconda/noarch/bioconductor-mutationalpatterns-3.12.0-r43hdfd78af_0.tar.bz2#d22030798f7d464ddb092e4651625210
-https://conda.anaconda.org/pcgr/noarch/r-pcgrr-2.1.0-r43_0.tar.bz2#26286bd8e7c053bbfc6feb776b9c7ecc
-https://conda.anaconda.org/pcgr/noarch/r-cpsr-2.1.0-r43_0.tar.bz2#3b943bcc34a9c4f8cc22adff3b9b561e
+https://conda.anaconda.org/pcgr/noarch/r-pcgrr-2.1.1-r43_0.tar.bz2#a6d3e29976dc88b38c32d5e81efddd8a
+https://conda.anaconda.org/pcgr/noarch/r-cpsr-2.1.1-r43_0.tar.bz2#3d35b8fcdfe8db6bcfca0c2bffe6d9da
diff --git a/conda/env/lock/pcgrr-osx-64.lock b/conda/env/lock/pcgrr-osx-64.lock
index ff3be5e2..213c318d 100644
--- a/conda/env/lock/pcgrr-osx-64.lock
+++ b/conda/env/lock/pcgrr-osx-64.lock
@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: osx-64
-# input_hash: 4f74ddfbe7422a107f4f4db2193dd325623f3530f448439d099c9a26c1d74d73
+# input_hash: 984dd35ed146656f4db8bc4dd3115042f0ca495178ec578ca7185577df2b41e1
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/noarch/_r-mutex-1.0.1-anacondar_1.tar.bz2#19f9db5f4f1b7f5ef5f6d67207f25f38
 https://conda.anaconda.org/conda-forge/osx-64/ca-certificates-2024.8.30-h8857fd0_0.conda#b7e5424e7f06547a903d28e4651dbb21
@@ -14,30 +14,31 @@ https://conda.anaconda.org/conda-forge/osx-64/fribidi-1.0.10-hbcb3906_0.tar.bz2#
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+https://conda.anaconda.org/conda-forge/noarch/libgfortran-devel_osx-64-13.2.0-h80d4556_3.conda#3a689f0d733e67828ad00eac5f3cf26e
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@@ -48,7 +49,7 @@ https://conda.anaconda.org/conda-forge/osx-64/graphite2-1.3.13-h73e2aa4_1003.con
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+https://conda.anaconda.org/conda-forge/osx-64/libcxx-devel-19.1.1-h7c275be_0.conda#3b6885706110b2947f1e0ac26b3508b4
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@@ -63,55 +64,55 @@ https://conda.anaconda.org/conda-forge/osx-64/readline-8.2-h9e318b2_1.conda#f17f
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+https://conda.anaconda.org/conda-forge/osx-64/r-xfun-0.48-r43hc83a2cd_0.conda#89a6692ffbc9ccff0353c6eab26c3753
 https://conda.anaconda.org/conda-forge/osx-64/r-xml-3.99_0.17-r43h695470d_1.conda#d145df185c089572d77b49ee1a007d1f
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@@ -205,7 +206,7 @@ https://conda.anaconda.org/bioconda/noarch/bioconductor-matrixgenerics-1.14.0-r4
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 https://conda.anaconda.org/conda-forge/noarch/r-argparse-2.2.3-r43hc72bb7e_1.conda#4a112f5abf0991d2f72d0efc7abbfc04
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+https://conda.anaconda.org/conda-forge/osx-64/r-askpass-1.2.1-r43h199b6f9_0.conda#4a4d49b04c9be27164b6320476be9a2f
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@@ -283,7 +284,7 @@ https://conda.anaconda.org/conda-forge/noarch/r-lava-1.8.0-r43hc72bb7e_0.conda#5
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 https://conda.anaconda.org/conda-forge/osx-64/r-reshape2-1.4.4-r43h25d921d_4.conda#c5fe66b1a3e732d5508c4c255a94e906
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+https://conda.anaconda.org/conda-forge/osx-64/r-rsqlite-2.3.7-r43hb79fae8_1.conda#5a0792984fc90b39aa6e5edd5b6ad2bf
 https://conda.anaconda.org/conda-forge/osx-64/r-tibble-3.2.1-r43h6b9d099_3.conda#6df3f4711a412c2cb3bb4cc559b14791
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@@ -324,5 +325,5 @@ https://conda.anaconda.org/bioconda/noarch/bioconductor-bsgenome.hsapiens.ucsc.h
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 https://conda.anaconda.org/bioconda/noarch/bioconductor-mutationalpatterns-3.12.0-r43hdfd78af_0.tar.bz2#d22030798f7d464ddb092e4651625210
-https://conda.anaconda.org/pcgr/noarch/r-pcgrr-2.1.0-r43_0.tar.bz2#26286bd8e7c053bbfc6feb776b9c7ecc
-https://conda.anaconda.org/pcgr/noarch/r-cpsr-2.1.0-r43_0.tar.bz2#3b943bcc34a9c4f8cc22adff3b9b561e
+https://conda.anaconda.org/pcgr/noarch/r-pcgrr-2.1.1-r43_0.tar.bz2#a6d3e29976dc88b38c32d5e81efddd8a
+https://conda.anaconda.org/pcgr/noarch/r-cpsr-2.1.1-r43_0.tar.bz2#3d35b8fcdfe8db6bcfca0c2bffe6d9da