From 2d04052c2bd414f1223d6820cd727e72da13ba58 Mon Sep 17 00:00:00 2001
From: Geert van Geest <geert.vangeest@bioinformatics.unibe.ch>
Date: Wed, 19 Oct 2022 16:37:15 +0200
Subject: [PATCH] adds script to install singularity

---
 scripts/install_singularity.sh | 35 ++++++++++++++++++++++++++++++++++
 1 file changed, 35 insertions(+)
 create mode 100644 scripts/install_singularity.sh

diff --git a/scripts/install_singularity.sh b/scripts/install_singularity.sh
new file mode 100644
index 0000000..5273f16
--- /dev/null
+++ b/scripts/install_singularity.sh
@@ -0,0 +1,35 @@
+#!/usr/bin/env bash
+
+# you can add this script as init for AWS server
+
+sudo apt-get update && sudo apt-get install -y \
+    build-essential \
+    libseccomp-dev \
+    libglib2.0-dev \
+    uuid-dev \
+    libgpgme-dev \
+    squashfs-tools \
+    libseccomp-dev \
+    wget \
+    pkg-config \
+    git \
+    cryptsetup \
+    runc
+
+export VERSION=1.19.2 OS=linux ARCH=amd64 && \
+  wget https://dl.google.com/go/go$VERSION.$OS-$ARCH.tar.gz && \
+  sudo tar -C /usr/local -xzvf go$VERSION.$OS-$ARCH.tar.gz && \
+  rm go$VERSION.$OS-$ARCH.tar.gz
+
+echo 'export GOPATH=${HOME}/go' >> ~/.bashrc && \
+    echo 'export PATH=/usr/local/go/bin:${PATH}:${GOPATH}/bin' >> ~/.bashrc && \
+    source ~/.bashrc
+
+git clone --recurse-submodules https://github.com/sylabs/singularity.git
+cd singularity
+
+git checkout --recurse-submodules v3.10.3
+
+./mconfig && \
+make -C ./builddir && \
+sudo make -C ./builddir install