Return .fasta containing records smaller than or larger than desired length.
This script is designed to be run on files in .fasta format
Dependencies:
- Python3
- Biopython
export PATH=$PATH:[PATH TO Seqer]
python short_seqer.py or long_seqer.py <desired length in bp (integer)> <assembly.fasta>
If no arguments are provided, the script will return help message.
- .fasta file containing sequences shorter or longer than desired length
If this script is useful to you, please cite the following in your publication:
@software{Seqer,
author = {Sim, Sheina B.},
title = {Seqer},
url = {https://github.com/sheinasim/seqer}
}
Sheina B. Sim
USDA-ARS
US Pacific Basin Agricultural Research Service
Hilo, Hawaii, 96720 USA
[email protected]
This script is in the public domain in the United States per 17 U.S.C. § 105