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Phenoscript & Phenospy User Guide

-- From description to knowledge --

General Workflow

In general, the steps involved in creating semantic descriptions with Pheoscript are as follows:

• Install Phenoscript for VS Code, and the Phenospy Python package.

• Configure your project and snippets.

• Describe your phenotypes in VS Code using Phenoscipt.

  • See Quick Start
  • See the detailed introduction.

• Convert Phenoscipt code into OWL file using Phenospy.

  • See Quick Start

• Using OWL file, you can:

  • Create an annotated natural language descriptions in Markdown format.

  • Submit OWL to Pheno-Repo (under development).

  • Compare phenotypes/species using computational tools (under development).

Content

• Intro to Phenoscript Language

• About Semantic Descriptions

• Install Phenoscript

• Install Phenospy

• Quick Start

• Configure snippets

• Issues