From 3236fb54e00f97c4f4c09c076ab9a5ef587ef554 Mon Sep 17 00:00:00 2001 From: Enrico Seiler Date: Sat, 2 Dec 2023 16:25:19 +0100 Subject: [PATCH] [DOC] multiple use of section label --- doc/fragments/io_sam_file_input.md | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/doc/fragments/io_sam_file_input.md b/doc/fragments/io_sam_file_input.md index 1fa7d2142e..4b04dfbf24 100644 --- a/doc/fragments/io_sam_file_input.md +++ b/doc/fragments/io_sam_file_input.md @@ -15,7 +15,7 @@ Passing reference information, e.g. - ref_sequences: The reference sequence information **in the same order as the ref_ids**. comes in handy once you want to convert the CIGAR string, read from your file, into an actual alignment. -This will be covered in the section \ref transform_cigar "Transforming the CIGAR information into an actual alignment". +This will be covered in the section "Transforming the CIGAR information into an actual alignment". In most cases the template parameters are deduced automatically: @@ -82,7 +82,6 @@ of seqan3::sam_file_input::mapq_type. \note But beware: with structured bindings you do need to get the order of elements correctly! #### Transforming the CIGAR information into an actual alignment -\anchor transform_cigar In SeqAn, we represent an alignment as a tuple of two `seqan3::aligned_sequence`s.