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Deal with .obsm and .varm when converting to SingleCellExperiment object #131

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LouiseDck opened this issue Sep 27, 2023 · 1 comment
Open

Deal with .obsm and .varm when converting to SingleCellExperiment object #131

LouiseDck opened this issue Sep 27, 2023 · 1 comment

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@LouiseDck
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At least have a way to store the basic dimensionality reductions in reducedDims.
Would be best to have the configuration of what to store where somewhat similar to the Seurat conversion. (See #60)
@lazappi
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lazappi commented Oct 10, 2023

This is the conversion we use in {zellkonverter}

https://github.com/theislab/zellkonverter/blob/devel/man/figures/AnnData2SCE.png?raw=true

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@lazappi @LouiseDck