Installation from source on M1 errors out - ld: file cannot be mmap()ed, errno=22 #910

Saransh-cpp · 2024-01-21T11:54:29Z

Saransh-cpp
Jan 21, 2024

I have been trying to install boost-histogram from source but I haven't been able to resolve the following error. Could someone please help me with debugging this? Thank you!

Error

(.env) saransh@saranshmacair boost-histogram % python3 -m pip install .                                             
Processing /Users/saransh/Code/HEP/boost-histogram
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Installing backend dependencies ... done
  Preparing metadata (pyproject.toml) ... done
Requirement already satisfied: numpy in ./.env/lib/python3.11/site-packages (from boost_histogram==1.4.1.dev19+g4e0ff41) (1.26.3)
Building wheels for collected packages: boost_histogram
  Building wheel for boost_histogram (pyproject.toml) ... error
  error: subprocess-exited-with-error
  
  × Building wheel for boost_histogram (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [64 lines of output]
      running bdist_wheel
      running build
      running build_py
      copying src/boost_histogram/version.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram
      copying src/boost_histogram/__init__.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram
      copying src/boost_histogram/numpy.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram
      copying src/boost_histogram/storage.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram
      copying src/boost_histogram/accumulators.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram
      copying src/boost_histogram/tag.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram
      copying src/boost_histogram/_internal/hist.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
      copying src/boost_histogram/_internal/axis.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
      copying src/boost_histogram/_internal/axis_transform.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
      copying src/boost_histogram/_internal/deprecated.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
      copying src/boost_histogram/_internal/__init__.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
      copying src/boost_histogram/_internal/view.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
      copying src/boost_histogram/_internal/utils.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
      copying src/boost_histogram/_internal/storage.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
      copying src/boost_histogram/_internal/traits.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
      copying src/boost_histogram/_internal/enum.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
      copying src/boost_histogram/_internal/typing.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
      copying src/boost_histogram/_internal/axestuple.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
      copying src/boost_histogram/axis/__init__.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/axis
      copying src/boost_histogram/axis/transform.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/axis
      running egg_info
      writing src/boost_histogram.egg-info/PKG-INFO
      writing dependency_links to src/boost_histogram.egg-info/dependency_links.txt
      writing requirements to src/boost_histogram.egg-info/requires.txt
      writing top-level names to src/boost_histogram.egg-info/top_level.txt
      reading manifest template 'MANIFEST.in'
      warning: no previously-included files matching '.pytest_cache' found anywhere in distribution
      warning: no previously-included files matching '.DS_Store' found anywhere in distribution
      warning: no previously-included files matching '.ipynb_checkpoints' found anywhere in distribution
      warning: no previously-included files matching '__pycache__' found anywhere in distribution
      adding license file 'LICENSE'
      writing manifest file 'src/boost_histogram.egg-info/SOURCES.txt'
      copying src/boost_histogram/py.typed -> build/lib.macosx-14-arm64-cpython-311/boost_histogram
      copying src/boost_histogram/version.pyi -> build/lib.macosx-14-arm64-cpython-311/boost_histogram
      copying src/boost_histogram/_core/__init__.pyi -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_core
      copying src/boost_histogram/_core/accumulators.pyi -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_core
      copying src/boost_histogram/_core/algorithm.pyi -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_core
      copying src/boost_histogram/_core/hist.pyi -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_core
      copying src/boost_histogram/_core/storage.pyi -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_core
      copying src/boost_histogram/_core/axis/__init__.pyi -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_core/axis
      copying src/boost_histogram/_core/axis/transform.pyi -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_core/axis
      running build_ext
      building 'boost_histogram._core' extension
      clang -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers -DPYBIND11_DETAILED_ERROR_MESSAGES=1 -Iinclude -Iextern/pybind11/include -Iextern/assert/include -Iextern/config/include -Iextern/core/include -Iextern/histogram/include -Iextern/mp11/include -Iextern/throw_exception/include -Iextern/variant2/include -I/Users/saransh/Code/HEP/boost-histogram/.env/include -I/opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.11/include/python3.11 -c src/register_accumulators.cpp -o build/temp.macosx-14-arm64-cpython-311/src/register_accumulators.o -fvisibility=hidden -g0 -std=c++14 -mmacosx-version-min=10.9
      clang -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers -DPYBIND11_DETAILED_ERROR_MESSAGES=1 -Iinclude -Iextern/pybind11/include -Iextern/assert/include -Iextern/config/include -Iextern/core/include -Iextern/histogram/include -Iextern/mp11/include -Iextern/throw_exception/include -Iextern/variant2/include -I/Users/saransh/Code/HEP/boost-histogram/.env/include -I/opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.11/include/python3.11 -c src/module.cpp -o build/temp.macosx-14-arm64-cpython-311/src/module.o -fvisibility=hidden -g0 -std=c++14 -mmacosx-version-min=10.9
      clang -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers -DPYBIND11_DETAILED_ERROR_MESSAGES=1 -Iinclude -Iextern/pybind11/include -Iextern/assert/include -Iextern/config/include -Iextern/core/include -Iextern/histogram/include -Iextern/mp11/include -Iextern/throw_exception/include -Iextern/variant2/include -I/Users/saransh/Code/HEP/boost-histogram/.env/include -I/opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.11/include/python3.11 -c src/register_axis.cpp -o build/temp.macosx-14-arm64-cpython-311/src/register_axis.o -fvisibility=hidden -g0 -std=c++14 -mmacosx-version-min=10.9
      clang -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers -DPYBIND11_DETAILED_ERROR_MESSAGES=1 -Iinclude -Iextern/pybind11/include -Iextern/assert/include -Iextern/config/include -Iextern/core/include -Iextern/histogram/include -Iextern/mp11/include -Iextern/throw_exception/include -Iextern/variant2/include -I/Users/saransh/Code/HEP/boost-histogram/.env/include -I/opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.11/include/python3.11 -c src/register_algorithm.cpp -o build/temp.macosx-14-arm64-cpython-311/src/register_algorithm.o -fvisibility=hidden -g0 -std=c++14 -mmacosx-version-min=10.9
      clang -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers -DPYBIND11_DETAILED_ERROR_MESSAGES=1 -Iinclude -Iextern/pybind11/include -Iextern/assert/include -Iextern/config/include -Iextern/core/include -Iextern/histogram/include -Iextern/mp11/include -Iextern/throw_exception/include -Iextern/variant2/include -I/Users/saransh/Code/HEP/boost-histogram/.env/include -I/opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.11/include/python3.11 -c src/register_histograms.cpp -o build/temp.macosx-14-arm64-cpython-311/src/register_histograms.o -fvisibility=hidden -g0 -std=c++14 -mmacosx-version-min=10.9
      clang -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers -DPYBIND11_DETAILED_ERROR_MESSAGES=1 -Iinclude -Iextern/pybind11/include -Iextern/assert/include -Iextern/config/include -Iextern/core/include -Iextern/histogram/include -Iextern/mp11/include -Iextern/throw_exception/include -Iextern/variant2/include -I/Users/saransh/Code/HEP/boost-histogram/.env/include -I/opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.11/include/python3.11 -c src/register_storage.cpp -o build/temp.macosx-14-arm64-cpython-311/src/register_storage.o -fvisibility=hidden -g0 -std=c++14 -mmacosx-version-min=10.9
      clang -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers -DPYBIND11_DETAILED_ERROR_MESSAGES=1 -Iinclude -Iextern/pybind11/include -Iextern/assert/include -Iextern/config/include -Iextern/core/include -Iextern/histogram/include -Iextern/mp11/include -Iextern/throw_exception/include -Iextern/variant2/include -I/Users/saransh/Code/HEP/boost-histogram/.env/include -I/opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.11/include/python3.11 -c src/register_transforms.cpp -o build/temp.macosx-14-arm64-cpython-311/src/register_transforms.o -fvisibility=hidden -g0 -std=c++14 -mmacosx-version-min=10.9
      clangclangclang: : : clang: clang: clang: clang: warning: warning: /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers: 'linker' input unused [-Wunused-command-line-argument]/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers: 'linker' input unused [-Wunused-command-line-argument]
      warning: warning: /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers: 'linker' input unused [-Wunused-command-line-argument]/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers: 'linker' input unused [-Wunused-command-line-argument]
      
      
      warning: warning: /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers: 'linker' input unused [-Wunused-command-line-argument]/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers: 'linker' input unused [-Wunused-command-line-argument]
      
      warning: /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers: 'linker' input unused [-Wunused-command-line-argument]
      clang++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers build/temp.macosx-14-arm64-cpython-311/src/module.o build/temp.macosx-14-arm64-cpython-311/src/register_accumulators.o build/temp.macosx-14-arm64-cpython-311/src/register_algorithm.o build/temp.macosx-14-arm64-cpython-311/src/register_axis.o build/temp.macosx-14-arm64-cpython-311/src/register_histograms.o build/temp.macosx-14-arm64-cpython-311/src/register_storage.o build/temp.macosx-14-arm64-cpython-311/src/register_transforms.o -o build/lib.macosx-14-arm64-cpython-311/boost_histogram/_core.cpython-311-darwin.so -mmacosx-version-min=10.9
      ld: file cannot be mmap()ed, errno=22 path=/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers in '/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers'
      clang: error: linker command failed with exit code 1 (use -v to see invocation)
      error: command '/usr/bin/clang++' failed with exit code 1
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for boost_histogram
Failed to build boost_histogram
ERROR: Could not build wheels for boost_histogram, which is required to install pyproject.toml-based projects

Versions

Clang:

(.env) saransh@saranshmacair boost-histogram % clang -v
Apple clang version 15.0.0 (clang-1500.0.40.1)
Target: arm64-apple-darwin23.1.0
Thread model: posix
InstalledDir: /Library/Developer/CommandLineTools/usr/bin

Python:

(.env) saransh@saranshmacair boost-histogram % python3 --version
Python 3.11.5

Verbose error

(.env) saransh@saranshmacair boost-histogram % python3 -m pip install -v .
Using pip 23.2.1 from /Users/saransh/Code/HEP/boost-histogram/.env/lib/python3.11/site-packages/pip (python 3.11)
Processing /Users/saransh/Code/HEP/boost-histogram
  Running command pip subprocess to install build dependencies
  Collecting setuptools>=45
    Obtaining dependency information for setuptools>=45 from https://files.pythonhosted.org/packages/55/3a/5121b58b578a598b269537e09a316ad2a94fdd561a2c6eb75cd68578cc6b/setuptools-69.0.3-py3-none-any.whl.metadata
    Using cached setuptools-69.0.3-py3-none-any.whl.metadata (6.3 kB)
  Collecting setuptools_scm[toml]>=4.1.2
    Obtaining dependency information for setuptools_scm[toml]>=4.1.2 from https://files.pythonhosted.org/packages/0e/a3/b9a8b0adfe672bf0df5901707aa929d30a97ee390ba651910186776746d2/setuptools_scm-8.0.4-py3-none-any.whl.metadata
    Using cached setuptools_scm-8.0.4-py3-none-any.whl.metadata (6.4 kB)
  Collecting packaging>=20 (from setuptools_scm[toml]>=4.1.2)
    Obtaining dependency information for packaging>=20 from https://files.pythonhosted.org/packages/ec/1a/610693ac4ee14fcdf2d9bf3c493370e4f2ef7ae2e19217d7a237ff42367d/packaging-23.2-py3-none-any.whl.metadata
    Using cached packaging-23.2-py3-none-any.whl.metadata (3.2 kB)
  Collecting typing-extensions (from setuptools_scm[toml]>=4.1.2)
    Obtaining dependency information for typing-extensions from https://files.pythonhosted.org/packages/b7/f4/6a90020cd2d93349b442bfcb657d0dc91eee65491600b2cb1d388bc98e6b/typing_extensions-4.9.0-py3-none-any.whl.metadata
    Using cached typing_extensions-4.9.0-py3-none-any.whl.metadata (3.0 kB)
  Using cached setuptools-69.0.3-py3-none-any.whl (819 kB)
  Using cached packaging-23.2-py3-none-any.whl (53 kB)
  Using cached setuptools_scm-8.0.4-py3-none-any.whl (42 kB)
  Using cached typing_extensions-4.9.0-py3-none-any.whl (32 kB)
  Installing collected packages: typing-extensions, setuptools, packaging, setuptools_scm
  Successfully installed packaging-23.2 setuptools-69.0.3 setuptools_scm-8.0.4 typing-extensions-4.9.0

  [notice] A new release of pip is available: 23.2.1 -> 23.3.2
  [notice] To update, run: pip install --upgrade pip
  Installing build dependencies ... done
  Running command Getting requirements to build wheel
  running egg_info
  writing src/boost_histogram.egg-info/PKG-INFO
  writing dependency_links to src/boost_histogram.egg-info/dependency_links.txt
  writing requirements to src/boost_histogram.egg-info/requires.txt
  writing top-level names to src/boost_histogram.egg-info/top_level.txt
  reading manifest template 'MANIFEST.in'
  warning: no previously-included files matching '.pytest_cache' found anywhere in distribution
  warning: no previously-included files matching '.DS_Store' found anywhere in distribution
  warning: no previously-included files matching '.ipynb_checkpoints' found anywhere in distribution
  warning: no previously-included files matching '__pycache__' found anywhere in distribution
  adding license file 'LICENSE'
  writing manifest file 'src/boost_histogram.egg-info/SOURCES.txt'
  Getting requirements to build wheel ... done
  Running command pip subprocess to install backend dependencies
  Collecting wheel
    Obtaining dependency information for wheel from https://files.pythonhosted.org/packages/c7/c3/55076fc728723ef927521abaa1955213d094933dc36d4a2008d5101e1af5/wheel-0.42.0-py3-none-any.whl.metadata
    Using cached wheel-0.42.0-py3-none-any.whl.metadata (2.2 kB)
  Using cached wheel-0.42.0-py3-none-any.whl (65 kB)
  Installing collected packages: wheel
  Successfully installed wheel-0.42.0

  [notice] A new release of pip is available: 23.2.1 -> 23.3.2
  [notice] To update, run: pip install --upgrade pip
  Installing backend dependencies ... done
  Running command Preparing metadata (pyproject.toml)
  running dist_info
  creating /private/var/folders/v1/w_dx9xn11zlgpffrd5ptcb380000gn/T/pip-modern-metadata-ojfin3dj/boost_histogram.egg-info
  writing /private/var/folders/v1/w_dx9xn11zlgpffrd5ptcb380000gn/T/pip-modern-metadata-ojfin3dj/boost_histogram.egg-info/PKG-INFO
  writing dependency_links to /private/var/folders/v1/w_dx9xn11zlgpffrd5ptcb380000gn/T/pip-modern-metadata-ojfin3dj/boost_histogram.egg-info/dependency_links.txt
  writing requirements to /private/var/folders/v1/w_dx9xn11zlgpffrd5ptcb380000gn/T/pip-modern-metadata-ojfin3dj/boost_histogram.egg-info/requires.txt
  writing top-level names to /private/var/folders/v1/w_dx9xn11zlgpffrd5ptcb380000gn/T/pip-modern-metadata-ojfin3dj/boost_histogram.egg-info/top_level.txt
  writing manifest file '/private/var/folders/v1/w_dx9xn11zlgpffrd5ptcb380000gn/T/pip-modern-metadata-ojfin3dj/boost_histogram.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no previously-included files matching '.pytest_cache' found anywhere in distribution
  warning: no previously-included files matching '.DS_Store' found anywhere in distribution
  warning: no previously-included files matching '.ipynb_checkpoints' found anywhere in distribution
  warning: no previously-included files matching '__pycache__' found anywhere in distribution
  adding license file 'LICENSE'
  writing manifest file '/private/var/folders/v1/w_dx9xn11zlgpffrd5ptcb380000gn/T/pip-modern-metadata-ojfin3dj/boost_histogram.egg-info/SOURCES.txt'
  creating '/private/var/folders/v1/w_dx9xn11zlgpffrd5ptcb380000gn/T/pip-modern-metadata-ojfin3dj/boost_histogram-1.4.1.dev19+g4e0ff41.dist-info'
  Preparing metadata (pyproject.toml) ... done
Requirement already satisfied: numpy in ./.env/lib/python3.11/site-packages (from boost_histogram==1.4.1.dev19+g4e0ff41) (1.26.3)
Building wheels for collected packages: boost_histogram
  Running command Building wheel for boost_histogram (pyproject.toml)
  running bdist_wheel
  running build
  running build_py
  copying src/boost_histogram/version.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram
  copying src/boost_histogram/__init__.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram
  copying src/boost_histogram/numpy.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram
  copying src/boost_histogram/storage.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram
  copying src/boost_histogram/accumulators.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram
  copying src/boost_histogram/tag.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram
  copying src/boost_histogram/_internal/hist.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
  copying src/boost_histogram/_internal/axis.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
  copying src/boost_histogram/_internal/axis_transform.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
  copying src/boost_histogram/_internal/deprecated.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
  copying src/boost_histogram/_internal/__init__.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
  copying src/boost_histogram/_internal/view.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
  copying src/boost_histogram/_internal/utils.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
  copying src/boost_histogram/_internal/storage.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
  copying src/boost_histogram/_internal/traits.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
  copying src/boost_histogram/_internal/enum.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
  copying src/boost_histogram/_internal/typing.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
  copying src/boost_histogram/_internal/axestuple.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_internal
  copying src/boost_histogram/axis/__init__.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/axis
  copying src/boost_histogram/axis/transform.py -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/axis
  running egg_info
  writing src/boost_histogram.egg-info/PKG-INFO
  writing dependency_links to src/boost_histogram.egg-info/dependency_links.txt
  writing requirements to src/boost_histogram.egg-info/requires.txt
  writing top-level names to src/boost_histogram.egg-info/top_level.txt
  reading manifest template 'MANIFEST.in'
  warning: no previously-included files matching '.pytest_cache' found anywhere in distribution
  warning: no previously-included files matching '.DS_Store' found anywhere in distribution
  warning: no previously-included files matching '.ipynb_checkpoints' found anywhere in distribution
  warning: no previously-included files matching '__pycache__' found anywhere in distribution
  adding license file 'LICENSE'
  writing manifest file 'src/boost_histogram.egg-info/SOURCES.txt'
  copying src/boost_histogram/py.typed -> build/lib.macosx-14-arm64-cpython-311/boost_histogram
  copying src/boost_histogram/version.pyi -> build/lib.macosx-14-arm64-cpython-311/boost_histogram
  copying src/boost_histogram/_core/__init__.pyi -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_core
  copying src/boost_histogram/_core/accumulators.pyi -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_core
  copying src/boost_histogram/_core/algorithm.pyi -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_core
  copying src/boost_histogram/_core/hist.pyi -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_core
  copying src/boost_histogram/_core/storage.pyi -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_core
  copying src/boost_histogram/_core/axis/__init__.pyi -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_core/axis
  copying src/boost_histogram/_core/axis/transform.pyi -> build/lib.macosx-14-arm64-cpython-311/boost_histogram/_core/axis
  running build_ext
  building 'boost_histogram._core' extension
  clang -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers -DPYBIND11_DETAILED_ERROR_MESSAGES=1 -Iinclude -Iextern/pybind11/include -Iextern/assert/include -Iextern/config/include -Iextern/core/include -Iextern/histogram/include -Iextern/mp11/include -Iextern/throw_exception/include -Iextern/variant2/include -I/Users/saransh/Code/HEP/boost-histogram/.env/include -I/opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.11/include/python3.11 -c src/register_accumulators.cpp -o build/temp.macosx-14-arm64-cpython-311/src/register_accumulators.o -fvisibility=hidden -g0 -std=c++14 -mmacosx-version-min=10.9
  clang -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers -DPYBIND11_DETAILED_ERROR_MESSAGES=1 -Iinclude -Iextern/pybind11/include -Iextern/assert/include -Iextern/config/include -Iextern/core/include -Iextern/histogram/include -Iextern/mp11/include -Iextern/throw_exception/include -Iextern/variant2/include -I/Users/saransh/Code/HEP/boost-histogram/.env/include -I/opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.11/include/python3.11 -c src/module.cpp -o build/temp.macosx-14-arm64-cpython-311/src/module.o -fvisibility=hidden -g0 -std=c++14 -mmacosx-version-min=10.9
  clang -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers -DPYBIND11_DETAILED_ERROR_MESSAGES=1 -Iinclude -Iextern/pybind11/include -Iextern/assert/include -Iextern/config/include -Iextern/core/include -Iextern/histogram/include -Iextern/mp11/include -Iextern/throw_exception/include -Iextern/variant2/include -I/Users/saransh/Code/HEP/boost-histogram/.env/include -I/opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.11/include/python3.11 -c src/register_algorithm.cpp -o build/temp.macosx-14-arm64-cpython-311/src/register_algorithm.o -fvisibility=hidden -g0 -std=c++14 -mmacosx-version-min=10.9
  clang -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers -DPYBIND11_DETAILED_ERROR_MESSAGES=1 -Iinclude -Iextern/pybind11/include -Iextern/assert/include -Iextern/config/include -Iextern/core/include -Iextern/histogram/include -Iextern/mp11/include -Iextern/throw_exception/include -Iextern/variant2/include -I/Users/saransh/Code/HEP/boost-histogram/.env/include -I/opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.11/include/python3.11 -c src/register_axis.cpp -o build/temp.macosx-14-arm64-cpython-311/src/register_axis.o -fvisibility=hidden -g0 -std=c++14 -mmacosx-version-min=10.9
  clang -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers -DPYBIND11_DETAILED_ERROR_MESSAGES=1 -Iinclude -Iextern/pybind11/include -Iextern/assert/include -Iextern/config/include -Iextern/core/include -Iextern/histogram/include -Iextern/mp11/include -Iextern/throw_exception/include -Iextern/variant2/include -I/Users/saransh/Code/HEP/boost-histogram/.env/include -I/opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.11/include/python3.11 -c src/register_histograms.cpp -o build/temp.macosx-14-arm64-cpython-311/src/register_histograms.o -fvisibility=hidden -g0 -std=c++14 -mmacosx-version-min=10.9
  clang -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers -DPYBIND11_DETAILED_ERROR_MESSAGES=1 -Iinclude -Iextern/pybind11/include -Iextern/assert/include -Iextern/config/include -Iextern/core/include -Iextern/histogram/include -Iextern/mp11/include -Iextern/throw_exception/include -Iextern/variant2/include -I/Users/saransh/Code/HEP/boost-histogram/.env/include -I/opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.11/include/python3.11 -c src/register_transforms.cpp -o build/temp.macosx-14-arm64-cpython-311/src/register_transforms.o -fvisibility=hidden -g0 -std=c++14 -mmacosx-version-min=10.9
  clang -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers -DPYBIND11_DETAILED_ERROR_MESSAGES=1 -Iinclude -Iextern/pybind11/include -Iextern/assert/include -Iextern/config/include -Iextern/core/include -Iextern/histogram/include -Iextern/mp11/include -Iextern/throw_exception/include -Iextern/variant2/include -I/Users/saransh/Code/HEP/boost-histogram/.env/include -I/opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.11/include/python3.11 -c src/register_storage.cpp -o build/temp.macosx-14-arm64-cpython-311/src/register_storage.o -fvisibility=hidden -g0 -std=c++14 -mmacosx-version-min=10.9
  clangclangclangclangclangclangclang: : : : : : : warning: warning: /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers: 'linker' input unused [-Wunused-command-line-argument]/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers: 'linker' input unused [-Wunused-command-line-argument]
  warning: /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers: 'linker' input unused [-Wunused-command-line-argument]
  warning: /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers: 'linker' input unused [-Wunused-command-line-argument]warning:
  /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers: 'linker' input unused [-Wunused-command-line-argument]

  warning: /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers: 'linker' input unused [-Wunused-command-line-argument]
  warning: /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers: 'linker' input unused [-Wunused-command-line-argument]
  clang++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers build/temp.macosx-14-arm64-cpython-311/src/module.o build/temp.macosx-14-arm64-cpython-311/src/register_accumulators.o build/temp.macosx-14-arm64-cpython-311/src/register_algorithm.o build/temp.macosx-14-arm64-cpython-311/src/register_axis.o build/temp.macosx-14-arm64-cpython-311/src/register_histograms.o build/temp.macosx-14-arm64-cpython-311/src/register_storage.o build/temp.macosx-14-arm64-cpython-311/src/register_transforms.o -o build/lib.macosx-14-arm64-cpython-311/boost_histogram/_core.cpython-311-darwin.so -mmacosx-version-min=10.9
  ld: file cannot be mmap()ed, errno=22 path=/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers in '/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/Headers'
  clang: error: linker command failed with exit code 1 (use -v to see invocation)
  error: command '/usr/bin/clang++' failed with exit code 1
  error: subprocess-exited-with-error
  
  × Building wheel for boost_histogram (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> See above for output.
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  full command: /Users/saransh/Code/HEP/boost-histogram/.env/bin/python3 /Users/saransh/Code/HEP/boost-histogram/.env/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /var/folders/v1/w_dx9xn11zlgpffrd5ptcb380000gn/T/tmpe97y5ff9
  cwd: /Users/saransh/Code/HEP/boost-histogram
  Building wheel for boost_histogram (pyproject.toml) ... error
  ERROR: Failed building wheel for boost_histogram
Failed to build boost_histogram
ERROR: Could not build wheels for boost_histogram, which is required to install pyproject.toml-based projects

Works on Ubuntu

The installation works perfectly fine in an Ubuntu Docker container, so I am guessing the problem is either with my local setup or M1 Macs in general:

FROM ubuntu:latest

RUN apt update && apt -y upgrade
RUN apt install -y python3 python3-pip gcc clang git
RUN python3 -m pip install -U setuptools wheel ipython

COPY . /boost-histogram/

RUN cd boost-histogram && python3 -m pip install -e .

henryiii · 2024-01-21T13:28:13Z

henryiii
Jan 21, 2024
Maintainer

First issue I see is the 3.9 headers being used with 3.11. Not sure how that could happen. Will check.

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Installation from source on M1 errors out - ld: file cannot be mmap()ed, errno=22 #910

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Installation from source on M1 errors out - ld: file cannot be mmap()ed, errno=22 #910

Saransh-cpp Jan 21, 2024

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Works on Ubuntu

Replies: 1 comment

henryiii Jan 21, 2024 Maintainer

Saransh-cpp
Jan 21, 2024

henryiii
Jan 21, 2024
Maintainer