-
Notifications
You must be signed in to change notification settings - Fork 1
/
m.bib
159 lines (142 loc) · 5.63 KB
/
m.bib
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
@MISC{manola:2004,
AUTHOR = {Frank Manola and Eric Miller},
TITLE = {RDF Primer},
HOWPUBLISHED = {Available via the World Wide Web at
\url{http://www.w3.org/TR/rdf-primer/}.},
YEAR = 2004
}
@BOOK{matlab:1998,
AUTHOR = {The MathWorks},
TITLE = {Using \textsc{Matlab}},
SERIES = {\textsc{Matlab}: The Language of Technical Computing},
PUBLISHER = {The MathWorks, Inc.},
YEAR = 1998,
ADDRESS = {Natik, MA},
LOCATION = P
}
@ARTICLE{mcadams:1997,
AUTHOR = {H. McAdams and A. Arkin},
TITLE = {Stochastic mechanisms in gene expression},
JOURNAL = PNAS,
YEAR = 1997,
VOLUME = 94,
PAGES = {814--819}
}
@MISC{mccollum_2003,
AUTHOR = {McCollum, Michael and Lancaster, Joseph},
TITLE = {BioSpreadsheet},
PUBLISHER = {\url{http://biocomp.ece.utk.edu/}},
YEAR = 2003
}
@MISC{mcguinness:2004,
AUTHOR = {Deborah L. McGuinness and Frank van Harmelen},
TITLE = {{OWL} Web Ontology Language Overview},
HOWPUBLISHED = {Available via the World Wide Web at
\url{http://www.w3.org/TR/owl-features/}},
YEAR = 2004
}
@MISC{mckusick:2000,
TITLE = {Online Mendelian Inheritance in Man, {OMIM\texttrademark}},
AUTHOR = {{McKusick-Nathans Institute for Genetic Medicine} and {Johns Hopkins University (Baltimore, MD)} and {National Center for Biotechnology Information, National Library of Medicine (Bethesda, MD)}},
YEAR = 2000,
HOWPUBLISHED = {Available via the World Wide Web at http://www.ncbi.nlm.nih.gov/omim/}
}
@BOOK{mclaughlin:2000,
AUTHOR = {Brett McLaughlin},
TITLE = {Java and {XML}},
PUBLISHER = OREILLY,
YEAR = 2000
}
@ARTICLE{mendes:1997,
AUTHOR = {P. Mendes},
TITLE = {Biochemistry by Numbers: Simulation of Biochemical
Pathways with {G}epasi~3},
JOURNAL = TIBS,
YEAR = 1997,
VOLUME = 22,
PAGES = {361--363}
}
@MISC{mendes:2001,
AUTHOR = {P. Mendes},
TITLE = {Gepasi 3.21},
HOWPUBLISHED = {Available via the World Wide Web at
\url{http://www.gepasi.org}},
YEAR = 2001
}
@MISC{mendes:2000,
AUTHOR = {P. Mendes},
TITLE = {New Research Software to Simulate Biochemical Processes},
HOWPUBLISHED = {Available via the World Wide Web at
\url{http://www.vbi.vt.edu/pr/press_releases/press_20001218_news_new-software.htm}},
YEAR = 2000
}
@MISC{microstar:1998,
AUTHOR = {{Microstar Software Ltd.}},
TITLE = {{\AE}lfred version 1.1},
HOWPUBLISHED = {Available via the World Wide Web at
\url{http://www.microstar.com/XML/}},
YEAR = 1998
}
@article{
minch_2003,
AUTHOR = {Minch, Eric and de Rinaldis, M and Weiss, S.},
TITLE = {{pathSCOUT}: exploration and analysis of biochemical pathways},
JOURNAL = {Bioinformatics},
VOLUME = {19},
NUMBER = {3},
PAGES = {431-432},
YEAR = 2003
}
@MISC{mindelectric:2001,
AUTHOR = {{The Mind Electric}},
TITLE = {The {GLUE} Platform},
HOWPUBLISHED = {Available via the World Wide Web at
\url{http://www.themindelectric.com/products/glue/glue.html}},
YEAR = 2001
}
@INCOLLECTION{morohashi:2001,
AUTHOR = {Mineo Morohashi and Michael Hucka and Herbert~M. Sauro and
Andrew Finney and Hamid Bolouri and John~C. Doyle and
Hiroaki Kitano},
TITLE = {Systems {B}iology {W}orkbench},
BOOKTITLE = {Development of Systems Biology},
EDITOR = {Hiroaki Kitano},
PUBLISHER = {Sprinter-Verlag Tokyo},
PAGES = {25--36},
CHAPTER = {1}
}
@ARTICLE{morton-firth:1998,
AUTHOR = {C.~J. Morton-Firth and D. Bray},
TITLE = {Predicting Temporal Fluctuations in an Intracellular
Signalling Pathway},
JOURNAL = JTB,
YEAR = 1998,
VOLUME = 192,
PAGES = {117-128}
}
@ARTICLE{mulder:2003,
AUTHOR = {Mulder, N. J. and Apweiler, R. and Attwood, T. K. and Bairoch, A. and Barrell, D. and Bateman, A. and Binns
D. and Biswas, M. and Bradley, P. and Bork, P. and Bucher, P. and Copley, R. R. and Courcelle, E. and Das, U. and Durbin, R. and Falquet, L. and Fleischmann, W. and Griffiths-Jones, S. and Haft, D. and Harte, N. and Hulo, N. and Kahn, D. and Kanapin, A. and Krestyaninova, M. and Lopez, R. and Letunic, I. and Lonsdale
D. and Silventoinen, V. and Orchard, S. E. and Pagni, M. and Peyruc, D. and Ponting, C. P. and Selengut, J. D. and Servant, F. and Sigrist, C. J. A. and Vaughan, R. and Zdobnov, E. M.},
TITLE = {The InterPro Database, 2003 brings increased coverage and new features},
JOURNAL = {Nucleic Acids Res.},
YEAR = 2003,
VOLUME = 31,
PAGES = {315-318}
}
@BOOK{musser:1996,
AUTHOR = {D R Musser and A Saini},
TITLE = {{STL} Tutorial and Reference Guide},
PUBLISHER = {Addison Wesley},
YEAR = 1996
}
@article{malik:2020,
title={BioModels---15 years of sharing computational models in life science},
author={Malik-Sheriff, Rahuman S and Glont, Mihai and Nguyen, Tung VN and Tiwari, Krishna and Roberts, Matthew G and Xavier, Ashley and Vu, Manh T and Men, Jinghao and Maire, Matthieu and Kananathan, Sarubini and Fairbanks, Emma L and Meyer, Johannes P and Arankalle, Chinmay and Varusai, Thawfeek M and Knight-Schrijver, Vincent and Li, Lu and Due\tilde{n}as-Roca, Corina and Dass, Gaurhari and Keating, Sarah M and Park, Young M and Buso, Nicola and Rodriguez, Nicolas and Hucka, Michael and Hermjakob, Henning},
journal={Nucleic acids research},
volume={48},
number={D1},
pages={D407--D415},
year={2020},
publisher={Oxford University Press}
}