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        TITLE = {{XML} {S}chema Part 0: Primer ({W3C} Candidate
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         YEAR = 2000
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@BOOK{farley:1998,
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@BOOK{fell:1997,
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        TITLE = {Understanding the Control of Metabolism},
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@MISC{finney:2000,
       AUTHOR = {Andrew Finney},
        TITLE = {Internal Discussion Document: Possible extensions to the {Systems Biology Markup Language}},
 HOWPUBLISHED = {Available via the World Wide Web at
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@MISC{finney:2001a,
       AUTHOR = {Andrew Finney},
        TITLE = {Miscellaneous Aspects of the Design of the {Systems
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@INPROCEEDINGS{finney:2001b,
       AUTHOR = {Andrew Finney and Michael Hucka and Herbert~M. Sauro and
                 John~C. Doyle and Hiroaki Kitano},
        TITLE = {An Overview of the {ERATO} {Systems Biology Workbench} Project},
    BOOKTITLE = {Proceedings of the 2nd Workshop on Computation and Biochemical
                 Pathways},
        PAGES = {115--122},
         YEAR = 2001,
       EDITOR = {R. Gauges and C. {van~Gend} and U. Kummer},
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    PUBLISHER = {European Media Labs}
}

@MISC{finney:2001c,
       AUTHOR = {Andrew Finney and Michael Hucka and Herbert~M. Sauro and Hamid Bolouri},
        TITLE = {Systems {B}iology {W}orkbench {C} Programmer's Manual},
 HOWPUBLISHED = {Available via the World Wide Web at
                 \url{http://www.sbw-sbml.org/}},
         YEAR = 2001
}

@MISC{finney:2001d,
       AUTHOR = {Andrew Finney and Michael Hucka and Herbert~M. Sauro and Hamid Bolouri},
        TITLE = {Systems {B}iology {W}orkbench {C++} Programmer's Manual},
 HOWPUBLISHED = {Available via the World Wide Web at
                 \url{http://www.sbw-sbml.org/}},
         YEAR = 2001
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@MISC{finney:2001e,
       AUTHOR = {Andrew Finney and Michael Hucka and Herbert~M. Sauro and Hamid Bolouri},
        TITLE = {Systems {B}iology {W}orkbench {J}ava Programmer's Manual},
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                 \url{http://www.sbw-sbml.org/}},
         YEAR = 2001
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@MISC{finney:2001f,
       AUTHOR = {Andrew Finney},
        TITLE = {Internal Discussion Document Possible extension to the {S}ystems {B}iology {M}arkup {L}anguage {C}omplex {S}pecies and {S}pecies {G}raphs},
         YEAR = 2001,
 HOWPUBLISHED = {Available via the World Wide Web at
                 \url{http://www.cds.caltech.edu/\~{}afinney/CplxSpecies.pdf}}
}

@MISC{finney:2002,
       AUTHOR = {Andrew Finney and Michael Hucka and Herbert~M. Sauro and Hamid Bolouri},
        TITLE = {Systems {B}iology {W}orkbench {C} Programmer's Manual},
 HOWPUBLISHED = {Available via the World Wide Web at
                 \url{http://www.sbw-sbml.org/}},
         YEAR = 2002
}

@MISC{finney:2002b,
       AUTHOR = {Andrew Finney and Michael Hucka and Herbert~M. Sauro and Hamid Bolouri},
        TITLE = {Systems {B}iology {W}orkbench {C++} Programmer's Manual},
 HOWPUBLISHED = {Available via the World Wide Web at
                 \url{http://www.sbw-sbml.org/}},
         YEAR = 2002
}

@MISC{finney:2002c,
       AUTHOR = {Andrew Finney and Victoria Gor and Eric Mjolsness and Hamid Bolouri},
        TITLE = {Systems {B}iology {M}arkup {L}anguage ({SBML}) {L}evel 2 {P}roposal: Miscellaneous Features},
         YEAR = 2002
}

@MISC{finney:2002d,
       AUTHOR = {Andrew Finney and Victoria Gor and Ben Bornstein and Eric Mjolsness and Hamid Bolouri},
        TITLE = {Systems {B}iology {M}arkup {L}anguage ({SBML}) {L}evel 2 {P}roposal: Array Features},
         YEAR = 2002
}

@MISC{finney:2002e,
       AUTHOR = {Andrew Finney and Michael Hucka and Herbert~M. Sauro and Hamid Bolouri},
        TITLE = {Systems {B}iology {W}orkbench {Perl} Programmer's Manual},
 HOWPUBLISHED = {Available via the World Wide Web at
                 \url{http://www.sbw-sbml.org/}},
         YEAR = 2002
}
@MISC{finney:2002f,
       AUTHOR = {Andrew Finney and Mike Hucka and Hamid Bolouri},
        TITLE = {Systems {B}iology {M}arkup {L}anguage ({SBML}) {L}evel 2: Structures and Facilities for Model Definitions},
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                 \url{http://sbml.org/documents/}},
         YEAR = 2002
}
@MISC{finney:2003,
       AUTHOR = {Andrew Finney and Victoria Gor and Ben Bornstein and Eric Mjolsness},
        TITLE = {Systems {B}iology {M}arkup {L}anguage ({SBML}) {L}evel 3 {P}roposal: Array Features},
         YEAR = 2003
}

@MISC{finney:2003b,
       AUTHOR = {Andrew Finney},
        TITLE = {Systems {B}iology {M}arkup {L}anguage ({SBML}) {L}evel 3 {P}roposal: Model Composition Features},
         YEAR = 2003,
 HOWPUBLISHED = {Available via the World Wide Web at
                 \url{http://www.cds.caltech.edu/\~afinney/model-composition.pdf}}
}

@ARTICLE{finney:2003c,
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        TITLE = {Systems {B}iology {M}arkup {L}anguage: {L}evel 2 and {B}eyond},
      JOURNAL = {Biochemical Society Transactions},
       VOLUME = 31,
        PAGES = {1472--1473},
         YEAR = 2003
}

@MISC{finney:2004,
       AUTHOR = {Andrew Finney},
        TITLE = {{Systems Biology Markup Language (SBML) Level 3 Proposal: Multi-component Species Features}},
         YEAR = 2004,
 HOWPUBLISHED = {Available via the World Wide Web at
                 \url{http://www.cds.caltech.edu/~afinney/multi-component-species.pdf}}
}

@BOOK{flanagan:1999,
       AUTHOR = {David Falangan},
    TITLE = {Java\textsuperscript{\tiny{\texttrademark}} in a Nutshell},
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@ARTICLE{foster:1996,
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@MISC{funahashi:2003,
       AUTHOR = {Akira Funahashi and Hiroaki Kitano},
        TITLE = {{CellDesigner}},
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